A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-Sep-2019 number of released structures: 10387
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NDB ID: NA0039  PDB ID: 3HQF 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
12BB_DC-3DC-2:DG2DG3_CC-0.786-0.453.549-4.259-3.12235.435-0.2360.6013.641-5.0956.94935.814
13BB_DC-2DC-1:DG1DG2_CC1.430.4243.2988.9812.59533.230.284-0.9183.5754.429-15.33134.484
14BB_DC-1DT0:DA0DG1_CC0.767-0.6783.357-5.117-1.99332.559-0.85-2.233.237-3.5249.04733.006
18BB_DC3DG4:DC-4DG-3_CC-0.1360.2682.9050.7987.31928.925-0.8490.4142.87914.36-1.56529.828
11BB_DG-4DC-3:DG3DC4_CC-0.164-0.9423.435-2.174-2.55530.587-1.244-0.1443.503-4.8264.10530.766
16BB_DG1DG2:DC-2DC-1_CC0.01-1.1764.0694.3843.55236.438-2.4510.7143.9165.639-6.95936.858
17BB_DG2DC3:DG-3DC-2_CC-0.607-0.8313.425-6.9130.68834.463-1.487-0.0923.4611.14711.52335.135
15BB_DT0DG1:DC-1DA0_CC-1.083-1.2542.8460.355.03124.388-4.1622.5992.52511.748-0.81824.897

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.