A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 4-Dec-2019 number of released structures: 10490
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NDB ID: NA0128  PDB ID: 3IRQ 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11G_DC1:DG13_F-0.444-0.021-0.1848.4631.639-0.553
13G_DC3:DG11_F-0.731-0.2530.2439.5029.4653.526
15G_DC5:DG9_F-1.2-0.1710.479-1.6535.1096.406
18G_DC8:DG6_F-0.688-0.294-0.0258.1351.5251.207
110G_DC10:DG4_F-0.786-0.4060.1354.328-0.9672.573
112G_DC12:DG2_F-0.577-0.3650.0455.2190.5172.743
12G_DG2:DC12_F0.247-0.1110.136-3.534-2.4574.717
14G_DG4:DC10_F1.011-0.020.236-1.609-0.171-6.733
16G_DG6:DC8_F1.2780.126-0.3-8.7896.727.753
19G_DG9:DC5_F0.381-0.3530.4971.334-4.9233.975
111G_DG11:DC3_F0.588-0.231-0.065-11.8-2.7380.808
113G_DG13:DC1_F-0.5190.033-0.127-9.245-4.753-5.11
17G_DT7:DA7_F2.4862.276-0.5530.504-3.70192.397

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.