3JPO: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 29-Jun-2022 number of released structures: 12153

Search for released structures

NDB ID: NA0144 PDB ID: 3JPO

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	3	D_DC3:DG3_T	0.774	0.113	0.354	-1.782	-24.229	8.425
1	1	D_DG1:DC5_T	-0.175	0.025	-0.155	-11.721	5.629	-0.633
1	4	D_DG4:DC2_T	-1.174	-0.407	0.357	0.997	-8.036	3.805
1	5	D_DG5:DC1_T	-0.314	-0.091	0.154	15.35	-8.421	-2.963
1	2	D_DT2:DA4_T	-0.398	-0.014	0.385	-7.38	-13.597	-0.966
1	10	P_DA5:DT12_T	-0.173	-0.028	-0.064	-4.067	-8.733	0.174
1	7	P_DC2:DG15_T	0.204	-0.18	0.23	-5.82	-7.052	-1.514
1	13	P_DC8:DG9_T	0.482	-0.281	-0.009	-3.291	-1.955	-1.063
1	6	P_DG1:DC16_T	-0.684	-0.397	0.444	-6.97	-14.639	0.861
1	9	P_DG4:DC13_T	-0.687	-0.189	-0.106	-0.602	-15.062	4.278
1	12	P_DG7:DC10_T	-0.349	-0.188	0.154	-3.11	-6.198	-2.055
1	14	P_DG9:DC8_T	-0.204	-0.25	-0.695	-14.066	-2.099	-1.68
1	15	P_DOC10:DG7_T	-0.31	-0.025	-0.066	-4.046	-3.755	-1.987
1	8	P_DT3:DA14_T	0.183	-0.252	0.175	0.084	-10.344	-2.82
1	11	P_DT6:DA11_T	-0.292	0.02	0.072	3.138	-10.36	2.798

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.