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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 29-Jun-2022 number of released structures: 12153
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NDB ID:
NA0144
PDB ID:
3JPO
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
3
D_DC3:DG3_T
0.774
0.113
0.354
-1.782
-24.229
8.425
1
1
D_DG1:DC5_T
-0.175
0.025
-0.155
-11.721
5.629
-0.633
1
4
D_DG4:DC2_T
-1.174
-0.407
0.357
0.997
-8.036
3.805
1
5
D_DG5:DC1_T
-0.314
-0.091
0.154
15.35
-8.421
-2.963
1
2
D_DT2:DA4_T
-0.398
-0.014
0.385
-7.38
-13.597
-0.966
1
10
P_DA5:DT12_T
-0.173
-0.028
-0.064
-4.067
-8.733
0.174
1
7
P_DC2:DG15_T
0.204
-0.18
0.23
-5.82
-7.052
-1.514
1
13
P_DC8:DG9_T
0.482
-0.281
-0.009
-3.291
-1.955
-1.063
1
6
P_DG1:DC16_T
-0.684
-0.397
0.444
-6.97
-14.639
0.861
1
9
P_DG4:DC13_T
-0.687
-0.189
-0.106
-0.602
-15.062
4.278
1
12
P_DG7:DC10_T
-0.349
-0.188
0.154
-3.11
-6.198
-2.055
1
14
P_DG9:DC8_T
-0.204
-0.25
-0.695
-14.066
-2.099
-1.68
1
15
P_DOC10:DG7_T
-0.31
-0.025
-0.066
-4.046
-3.755
-1.987
1
8
P_DT3:DA14_T
0.183
-0.252
0.175
0.084
-10.344
-2.82
1
11
P_DT6:DA11_T
-0.292
0.02
0.072
3.138
-10.36
2.798
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.