A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 29-Jun-2022 number of released structures: 12153
Search for released structures

NDB ID: NA0144  PDB ID: 3JPO 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13D_DC3:DG3_T0.7740.1130.354-1.782-24.2298.425
11D_DG1:DC5_T-0.1750.025-0.155-11.7215.629-0.633
14D_DG4:DC2_T-1.174-0.4070.3570.997-8.0363.805
15D_DG5:DC1_T-0.314-0.0910.15415.35-8.421-2.963
12D_DT2:DA4_T-0.398-0.0140.385-7.38-13.597-0.966
110P_DA5:DT12_T-0.173-0.028-0.064-4.067-8.7330.174
17P_DC2:DG15_T0.204-0.180.23-5.82-7.052-1.514
113P_DC8:DG9_T0.482-0.281-0.009-3.291-1.955-1.063
16P_DG1:DC16_T-0.684-0.3970.444-6.97-14.6390.861
19P_DG4:DC13_T-0.687-0.189-0.106-0.602-15.0624.278
112P_DG7:DC10_T-0.349-0.1880.154-3.11-6.198-2.055
114P_DG9:DC8_T-0.204-0.25-0.695-14.066-2.099-1.68
115P_DOC10:DG7_T-0.31-0.025-0.066-4.046-3.755-1.987
18P_DT3:DA14_T0.183-0.2520.1750.084-10.344-2.82
111P_DT6:DA11_T-0.2920.020.0723.138-10.362.798

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.