3JPO: Base Pair Morphology Step Parameters

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NDB ID: NA0144 PDB ID: 3JPO

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	3	DD_DC3DG4:DC2DG3_TT	0.072	1.564	3.349	1.801	0.872	30.505	2.788	0.232	3.389	1.654	-3.419	30.569
1	1	DD_DG1DT2:DA4DC5_TT	-0.994	-0.624	3.294	-4.651	7.152	25.671	-3.17	0.933	3.138	15.558	10.119	27.029
1	4	DD_DG4DG5:DC1DC2_TT	-0.322	0.748	3.175	-0.994	6.375	35.167	0.305	0.382	3.264	10.442	1.628	35.736
1	2	DD_DT2DC3:DG3DA4_TT	0.119	0.1	3.13	1.056	-3.402	39.256	0.533	-0.058	3.113	-5.05	-1.569	39.411
1	9	PP_DA5DT6:DA11DT12_TT	0.008	-0.629	3.123	0.249	-1.995	29.056	-0.831	0.037	3.158	-3.97	-0.495	29.124
1	6	PP_DC2DT3:DA14DG15_TT	-0.417	-0.195	3.144	1.528	6.982	31.059	-1.568	1.025	3.007	12.827	-2.808	31.851
1	12	PP_DC8DG9:DC8DG9_TT	1.2	-0.068	3.671	7.185	9.137	34.917	-1.553	-0.768	3.705	14.731	-11.583	36.744
1	5	PP_DG1DC2:DG15DC16_TT	-0.465	-0.671	3.168	2.34	5.587	38.126	-1.671	0.978	3.011	8.487	-3.554	38.587
1	8	PP_DG4DA5:DT12DC13_TT	-0.48	0.033	3.283	-3.717	4.241	38.47	-0.472	0.264	3.299	6.394	5.605	38.866
1	11	PP_DG7DC8:DG9DC10_TT	0.547	-0.591	3.423	2.412	4.079	32.545	-1.77	-0.536	3.357	7.231	-4.276	32.879
1	13	PP_DG9DOC10:DG7DC8_TT	-0.49	-0.605	3.068	-4.603	4.973	30.754	-1.983	0.099	2.976	9.236	8.55	31.474
1	7	PP_DT3DG4:DC13DA14_TT	0.528	0.107	3.275	0.516	8.53	32.182	-1.249	-0.835	3.206	15.059	-0.911	33.268
1	10	PP_DT6DG7:DC10DA11_TT	-0.025	-0.195	3.344	-0.323	6.819	38.686	-1.117	-0.002	3.264	10.197	0.483	39.261

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.