A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 17-Aug-2022 number of released structures: 12237
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NDB ID: NA0203  PDB ID: 3K59 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13T_DA807:DT911_P-0.129-0.065-0.161-2.792-7.9485.391
18T_DA812:DT906_P-0.02-0.269-0.0051.322-6.014-0.515
112T_DA816:DT902_P-0.011-0.1660.2996.229-10.221-2.793
14T_DC808:DG910_P0.288-0.161-0.011-7.727-9.1230.259
16T_DC810:DG908_P0.213-0.1980.1192.618-11.171-1.741
111T_DC815:DG903_P0.305-0.1680.434-6.487-8.9255.686
113T_DC817:DG901_P0.34-0.396-0.1188.682-4.923-1.054
11T_DG805:DOC913_P-0.377-0.142-0.14-10.145-9.1122.072
15T_DG809:DC909_P-0.119-0.0990.0850.93-1.382-1.211
19T_DG813:DC905_P-0.171-0.1880.014.241-11.7534.379
110T_DG814:DC904_P-0.295-0.165-0.067-3.529-11.738-0.751
12T_DT806:DA912_P-0.076-0.095-0.406-1.3735.481-2.91
17T_DT811:DA907_P-0.357-0.024-0.0426.27-13.944-2.463

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.