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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID:
NA0207
PDB ID:
3K5N
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
5
T_DA814:DT906_P
0.865
0.643
0.403
19.67
-5.195
-9.76
1
9
T_DA818:DT902_P
-0.163
-0.714
-0.263
-7.412
-14.648
-12.914
1
2
T_DC810:DG910_P
0.677
1.034
0.468
-3.511
-11.665
28.204
1
4
T_DC812:DG908_P
1.347
0.39
0.731
-12.639
-11.271
24.245
1
8
T_DC817:DG903_P
0.053
-0.738
0.08
-7.951
-8.192
-0.895
1
10
T_DC819:DG901_P
-0.384
-0.608
-0.199
-3.538
1.407
-4.208
1
3
T_DG811:DC909_P
0.523
-0.77
0.189
3.991
-14.806
-12.048
1
6
T_DG815:DC905_P
0.092
-0.066
0.274
8.296
-3.626
2.908
1
7
T_DG816:DC904_P
0.004
-0.871
-0.125
1.295
5.279
-5.914
1
1
T_DT808:DA912_P
-0.764
-0.439
-0.056
-6.82
-7.445
-3.101
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.
