A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: NA0207  PDB ID: 3K5N 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
15T_DA814:DT906_P0.8650.6430.40319.67-5.195-9.76
19T_DA818:DT902_P-0.163-0.714-0.263-7.412-14.648-12.914
12T_DC810:DG910_P0.6771.0340.468-3.511-11.66528.204
14T_DC812:DG908_P1.3470.390.731-12.639-11.27124.245
18T_DC817:DG903_P0.053-0.7380.08-7.951-8.192-0.895
110T_DC819:DG901_P-0.384-0.608-0.199-3.5381.407-4.208
13T_DG811:DC909_P0.523-0.770.1893.991-14.806-12.048
16T_DG815:DC905_P0.092-0.0660.2748.296-3.6262.908
17T_DG816:DC904_P0.004-0.871-0.1251.2955.279-5.914
11T_DT808:DA912_P-0.764-0.439-0.056-6.82-7.445-3.101

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.