A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: NA0319  PDB ID: 3KHG 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
16D_DA807:DT913_E-0.5270.011-0.341-9.6-13.545.644
111D_DA812:DT908_E-0.037-0.11-0.00812.1259.84-3.185
11D_DG802:DC918_E-0.3940.645-0.467-14.661-11.0583.249
14D_DG805:DC915_E-0.7680.1490.059-7.015-20.006-0.802
15D_DG806:DC914_E-0.0940.189-0.066-14.004-15.2642.975
18D_DG809:DC911_E-0.4280.029-1.268-21.944-7.4621.752
19D_DG810:DC910_E-0.2450.149-0.349-20.38-0.2193.852
112D_DG813:DC907_E-0.167-0.008-0.01626.078-14.2435.85
12D_DT803:DA917_E-0.5840.392-0.70716.549-7.506-2.964
13D_DT804:DA916_E0.464-0.1050.1443.629-4.93-11.581
17D_DT808:DA912_E0.114-0.115-0.488-3.769-16.224-6.47
110D_DT811:DA909_E-0.652-0.1490.041-2.909-4.824-4.936
117H_DA1812:DT1908_J0.6360.204-0.1514.910.6456.837
113H_DG1806:DC1914_J-1.5190.6660.3975.87-40.18224.917
115H_DG1810:DC1910_J-1.087-0.159-0.0830.172-10.484-1.349
118H_DG1813:DC1907_J0.0180.0540.11816.79510.1563.893
114H_DT1808:DA1912_J-1.0990.394-0.67127.267-34.63111.634
116H_DT1811:DA1909_J-0.214-0.146-0.2129.263-2.6381.026

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.