A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 28-Sep-2022 number of released structures: 12311
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NDB ID: NA0403  PDB ID: 3KYL 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14E_A4:DT21_E-0.718-0.1750.32710.614-18.4272.023
19E_A9:DT16_E0.438-0.0680.036-13.739-5.4281.769
11E_C1:DG24_E1.273-0.115-0.287-5.268-23.347-3.445
15E_C5:DG20_E0.48-0.2720.05610.905-27.5793.248
16E_C6:DG19_E-0.095-0.1290.0020.43-15.833-4.106
110E_C10:DG15_E-0.147-0.0880.00514.93-0.861-3.731
13E_G3:DC22_E-0.0080.0770.3726.377-13.125-5.598
18E_G8:DC17_E-0.483-0.4440.371-4.442-19.308-3.503
12E_U2:DA23_E-0.2423.0660.737-3.2652.901-100.758
17E_U7:DA18_E0.292-0.252-0.1450.547-10.9232.928

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.