A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: NA0403  PDB ID: 3KYL 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
14EE_A4C5:DG20DT21_EE0.454-1.2873.3273.9321.14538.644-2.077-0.1953.3181.725-5.92138.852
19EE_A9C10:DG15DT16_EE0.152-0.272.7363.0854.66622.156-2.0670.5322.6211.9-7.86822.842
11EE_C1U2:DA23DG24_EE0.2-2.5253.193-3.10514.27575.389-2.42-0.2442.74311.5692.51776.585
15EE_C5C6:DG19DG20_EE-0.685-1.7543.429-0.04210.25329.231-5.1941.2762.67619.5720.0830.94
16EE_C6U7:DA18DG19_EE0.47-0.5283.392.90614.22733.894-2.803-0.3442.96923.13-4.72436.79
13EE_G3A4:DT21DC22_EE0.324-1.0163.129-1.8473.00633.029-2.251-0.8583.0065.2683.23733.212
18EE_G8A9:DT16DC17_EE-0.341-0.9293.5214.372-3.91142.026-0.8530.9543.538-5.422-6.0642.415
12EE_U2G3:DC22DA23_EE-2.9110.5343.028-0.66-3.863-30.592-0.307-5.5943.017.285-1.244-30.836
17EE_U7G8:DC17DA18_EE0.766-2.2623.1921.1412.19224.999-7.13-1.3681.93126.25-2.45427.794

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.