3LZI: Base Pair Morphology Step Parameters

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NDB ID: NA0471 PDB ID: 3LZI

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	3	TT_DA7DA8:DT112DT113_PP	0.37	-0.503	3.303	-1.736	-1.84	27.045	-0.602	-1.229	3.3	-3.923	3.702	27.161
1	4	TT_DA8DG9:DC111DT112_PP	-0.913	-0.284	3.17	-5.712	1.032	33.546	-0.648	0.658	3.266	1.771	9.805	34.03
1	7	TT_DA11DG12:DC108DT109_PP	0.733	-0.858	3.312	-5.624	6.507	30.81	-2.7	-2.317	2.899	11.958	10.336	31.96
1	6	TT_DC10DA11:DT109DG110_PP	-0.901	-0.267	3.454	-4.127	4.96	36.26	-1.141	0.828	3.467	7.892	6.567	36.81
1	10	TT_DC14DC15:DG105DG106_PP	0.751	-0.138	3.219	-2.29	10.483	33.296	-1.771	-1.587	2.984	17.731	3.873	34.935
1	11	TT_DC15DG16:DC104DG105_PP	0.421	0.267	3.462	6.75	6.154	39.607	-0.353	0.202	3.487	8.938	-9.804	40.605
1	1	TT_DG5DT6:DA114DOC115_PP	-0.931	-1.04	3.227	2.781	6.87	28.075	-3.492	2.432	2.795	13.857	-5.61	29.018
1	5	TT_DG9DC10:DG110DC111_PP	-0.282	-0.25	3.276	4.206	5.358	33.733	-1.252	1.127	3.144	9.118	-7.157	34.394
1	8	TT_DG12DT13:DA107DC108_PP	-0.907	-0.676	3.306	3.458	3.583	34.512	-1.666	2.032	3.12	6.0	-5.791	34.859
1	12	TT_DG16DC17:DG103DC104_PP	0.787	-0.028	2.953	0.765	5.57	23.035	-1.74	-1.686	2.889	13.686	-1.879	23.702
1	2	TT_DT6DA7:DT113DA114_PP	-0.019	-0.422	3.415	-2.741	2.954	40.914	-0.934	-0.282	3.372	4.213	3.91	41.103
1	9	TT_DT13DC14:DG106DA107_PP	0.545	0.043	3.236	2.244	8.776	37.747	-1.005	-0.548	3.193	13.331	-3.408	38.78

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.