A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: NA0498  PDB ID: 3M9M 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
16P_DA6:DT12_T0.378-0.192-0.037-2.2554.774.622
17P_DA7:DT11_T0.450.186-0.569-6.3734.6714.747
110P_DA10:DT8_T0.149-0.180.0954.216-2.95214.017
111P_DA11:DT7_T0.6130.2830.09114.384-7.6362.023
112P_DA12:DT6_T-0.547-0.3780.02614.3591.7836.226
11P_DG1:DC17_T-0.213-0.4720.0898.238-2.096-8.563
12P_DG2:DC16_T-0.081-0.719-0.2476.862-1.539-1.927
13P_DG3:DC15_T-0.095-0.2890.1095.4012.118-6.63
14P_DG4:DC14_T-0.0250.1990.1799.203-1.8614.13
15P_DG5:DC13_T0.515-0.451-0.137-2.562-3.933.314
18P_DG8:DC10_T-0.736-0.6110.00913.127-0.6094.871
19P_DG9:DC9_T0.392-0.399-0.317-7.9831.1212.747

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.