A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
Search for released structures

NDB ID: NA0498  PDB ID: 3M9M 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
16PP_DA6DA7:DT11DT12_TT-0.625-0.2683.3680.5288.7235.151-1.6821.0833.20314.169-0.85836.187
17PP_DA7DG8:DC10DT11_TT-0.1360.4983.276-0.121-3.95635.6331.3730.2043.205-6.4390.19635.845
110PP_DA10DA11:DT7DT8_TT-0.525-0.5293.3574.238-4.96635.267-0.1271.4783.316-8.11-6.92235.847
111PP_DA11DA12:DT6DT7_TT0.482-0.73.405-0.4763.46323.538-2.864-1.333.2598.4291.15923.792
11PP_DG1DG2:DC16DC17_TT0.742-0.7273.4334.948-1.31630.752-1.085-0.373.534-2.459-9.2531.165
12PP_DG2DG3:DC15DC16_TT-1.3460.0053.562-6.7540.68131.581-0.1291.0643.7611.23312.23432.284
13PP_DG3DG4:DC14DC15_TT1.098-0.3793.2572.2793.57732.848-1.269-1.5423.2666.293-4.00833.113
14PP_DG4DG5:DC13DC14_TT0.241-1.5553.4872.85913.57434.87-4.18-0.0042.72721.622-4.55437.448
15PP_DG5DA6:DT12DC13_TT-1.0941.0093.331-2.4626.87845.5230.671.1763.4918.8213.15746.074
18PP_DG8DG9:DC9DC10_TT-0.244-0.8723.998-1.8460.07938.133-1.3460.0884.0040.1212.82438.176
19PP_DG9DA10:DT8DC9_TT0.0890.5362.976-0.8148.54931.723-0.418-0.2883.01115.2921.45532.836

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.