3M9M: Base Pair Morphology Step Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 31-May-2023 number of released structures: 12820

Search for released structures

NDB ID: NA0498 PDB ID: 3M9M

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	6	PP_DA6DA7:DT11DT12_TT	-0.625	-0.268	3.368	0.528	8.72	35.151	-1.682	1.083	3.203	14.169	-0.858	36.187
1	7	PP_DA7DG8:DC10DT11_TT	-0.136	0.498	3.276	-0.121	-3.956	35.633	1.373	0.204	3.205	-6.439	0.196	35.845
1	10	PP_DA10DA11:DT7DT8_TT	-0.525	-0.529	3.357	4.238	-4.966	35.267	-0.127	1.478	3.316	-8.11	-6.922	35.847
1	11	PP_DA11DA12:DT6DT7_TT	0.482	-0.7	3.405	-0.476	3.463	23.538	-2.864	-1.33	3.259	8.429	1.159	23.792
1	1	PP_DG1DG2:DC16DC17_TT	0.742	-0.727	3.433	4.948	-1.316	30.752	-1.085	-0.37	3.534	-2.459	-9.25	31.165
1	2	PP_DG2DG3:DC15DC16_TT	-1.346	0.005	3.562	-6.754	0.681	31.581	-0.129	1.064	3.761	1.233	12.234	32.284
1	3	PP_DG3DG4:DC14DC15_TT	1.098	-0.379	3.257	2.279	3.577	32.848	-1.269	-1.542	3.266	6.293	-4.008	33.113
1	4	PP_DG4DG5:DC13DC14_TT	0.241	-1.555	3.487	2.859	13.574	34.87	-4.18	-0.004	2.727	21.622	-4.554	37.448
1	5	PP_DG5DA6:DT12DC13_TT	-1.094	1.009	3.331	-2.462	6.878	45.523	0.67	1.176	3.491	8.821	3.157	46.074
1	8	PP_DG8DG9:DC9DC10_TT	-0.244	-0.872	3.998	-1.846	0.079	38.133	-1.346	0.088	4.004	0.121	2.824	38.176
1	9	PP_DG9DA10:DT8DC9_TT	0.089	0.536	2.976	-0.814	8.549	31.723	-0.418	-0.288	3.011	15.292	1.455	32.836

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.