A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
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NDB ID: NA0494  PDB ID: 3MDC 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
17T_DA8:DT4_P-0.157-0.092-0.037-3.431-1.5382.865
11T_DC1:DG4_D0.359-0.0230.36-19.555.375-1.707
14T_DC4:DG1_D0.416-0.2940.11713.643-6.324-1.013
18T_DC9:DG3_P0.156-0.2910.0222.833-7.651-2.313
12T_DG2:DC3_D-0.0480.00.19610.6680.3232.861
13T_DG3:DC2_D0.032-0.131-0.3073.249-5.508-3.454
15T_DG6:DC6_P-0.256-0.1030.3358.351-3.755-2.512
110T_DG11:DC1_P-0.225-0.1610.54721.957-13.0231.032
16T_DT7:DA5_P-0.022-0.237-0.1015.278-12.174-1.44
19T_DT10:DA2_P-0.109-0.0710.03.981-8.56-0.075

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.