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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID:
NA0583
PDB ID:
3NAE
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
3
T_DA7:DT113_P
0.142
-0.205
0.14
1.421
-6.616
4.16
1
4
T_DA8:DT112_P
-0.163
-0.251
-0.198
4.099
-3.773
3.165
1
7
T_DA11:DT109_P
-0.014
-0.073
-0.029
2.031
-9.788
0.059
1
6
T_DC10:DG110_P
0.327
-0.125
-0.227
10.187
-11.282
-1.952
1
10
T_DC14:DG106_P
0.481
-0.294
0.035
-3.904
-11.855
-0.503
1
11
T_DC15:DG105_P
0.509
-0.194
0.02
-1.752
-9.644
2.653
1
13
T_DC17:DG103_P
0.359
-0.237
-0.045
1.011
2.77
-2.29
1
1
T_DG5:DOC115_P
-0.182
-0.156
-0.04
-8.542
-12.084
0.63
1
5
T_DG9:DC111_P
-0.214
-0.173
0.156
-1.538
-12.014
-0.275
1
8
T_DG12:DC108_P
-0.466
-0.207
0.342
3.77
-14.266
0.594
1
12
T_DG16:DC104_P
-0.031
-0.076
0.197
-11.8
-15.191
1.149
1
2
T_DT6:DA114_P
-0.021
-0.135
-0.284
-0.195
0.898
-3.683
1
9
T_DT13:DA107_P
-0.148
-0.146
-0.09
-1.148
-13.246
1.242
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.