3NAE: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 28-Sep-2022 number of released structures: 12311

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NDB ID: NA0583 PDB ID: 3NAE

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	3	T_DA7:DT113_P	0.142	-0.205	0.14	1.421	-6.616	4.16
1	4	T_DA8:DT112_P	-0.163	-0.251	-0.198	4.099	-3.773	3.165
1	7	T_DA11:DT109_P	-0.014	-0.073	-0.029	2.031	-9.788	0.059
1	6	T_DC10:DG110_P	0.327	-0.125	-0.227	10.187	-11.282	-1.952
1	10	T_DC14:DG106_P	0.481	-0.294	0.035	-3.904	-11.855	-0.503
1	11	T_DC15:DG105_P	0.509	-0.194	0.02	-1.752	-9.644	2.653
1	13	T_DC17:DG103_P	0.359	-0.237	-0.045	1.011	2.77	-2.29
1	1	T_DG5:DOC115_P	-0.182	-0.156	-0.04	-8.542	-12.084	0.63
1	5	T_DG9:DC111_P	-0.214	-0.173	0.156	-1.538	-12.014	-0.275
1	8	T_DG12:DC108_P	-0.466	-0.207	0.342	3.77	-14.266	0.594
1	12	T_DG16:DC104_P	-0.031	-0.076	0.197	-11.8	-15.191	1.149
1	2	T_DT6:DA114_P	-0.021	-0.135	-0.284	-0.195	0.898	-3.683
1	9	T_DT13:DA107_P	-0.148	-0.146	-0.09	-1.148	-13.246	1.242

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.