A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 28-Sep-2022 number of released structures: 12311
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NDB ID: NA0583  PDB ID: 3NAE 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13T_DA7:DT113_P0.142-0.2050.141.421-6.6164.16
14T_DA8:DT112_P-0.163-0.251-0.1984.099-3.7733.165
17T_DA11:DT109_P-0.014-0.073-0.0292.031-9.7880.059
16T_DC10:DG110_P0.327-0.125-0.22710.187-11.282-1.952
110T_DC14:DG106_P0.481-0.2940.035-3.904-11.855-0.503
111T_DC15:DG105_P0.509-0.1940.02-1.752-9.6442.653
113T_DC17:DG103_P0.359-0.237-0.0451.0112.77-2.29
11T_DG5:DOC115_P-0.182-0.156-0.04-8.542-12.0840.63
15T_DG9:DC111_P-0.214-0.1730.156-1.538-12.014-0.275
18T_DG12:DC108_P-0.466-0.2070.3423.77-14.2660.594
112T_DG16:DC104_P-0.031-0.0760.197-11.8-15.1911.149
12T_DT6:DA114_P-0.021-0.135-0.284-0.1950.898-3.683
19T_DT13:DA107_P-0.148-0.146-0.09-1.148-13.2461.242

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.