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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 26-Jan-2023 number of released structures: 12597
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NDB ID:
NA0698
PDB ID:
3OHA
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
3
P_DC3:DG14_T
0.168
-0.073
0.319
-12.566
-11.957
-0.16
1
4
P_DC4:DG13_T
0.049
-0.129
0.328
-16.042
-3.838
-2.041
1
6
P_DC6:DG11_T
0.125
-0.191
-0.202
1.1
-5.603
-0.818
1
7
P_DC7:DG10_T
0.379
-0.117
-0.194
9.027
-6.234
3.885
1
8
P_DC8:DG9_T
0.108
-0.264
-0.443
10.75
-3.142
-3.278
1
9
P_DC9:DG8_T
0.237
-0.441
-0.073
-4.409
-6.156
-1.577
1
1
P_DG1:DC16_T
-0.144
-0.091
-0.193
-14.032
-16.605
-0.464
1
11
P_DOC11:DG6_T
0.005
-0.171
0.127
-9.954
-11.467
2.613
1
2
P_DT2:DA15_T
-0.279
-0.017
0.013
0.568
-11.596
3.104
1
5
P_DT5:DA12_T
-0.12
-0.103
0.125
-5.359
-6.816
0.32
1
10
P_DT10:DA7_T
0.143
-0.218
0.136
-0.33
-16.56
0.669
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.