3OHA: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128

Search for released structures

NDB ID: NA0698 PDB ID: 3OHA

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	3	P_DC3:DG14_T	0.168	-0.073	0.319	-12.566	-11.957	-0.16
1	4	P_DC4:DG13_T	0.049	-0.129	0.328	-16.042	-3.838	-2.041
1	6	P_DC6:DG11_T	0.125	-0.191	-0.202	1.1	-5.603	-0.818
1	7	P_DC7:DG10_T	0.379	-0.117	-0.194	9.027	-6.234	3.885
1	8	P_DC8:DG9_T	0.108	-0.264	-0.443	10.75	-3.142	-3.278
1	9	P_DC9:DG8_T	0.237	-0.441	-0.073	-4.409	-6.156	-1.577
1	1	P_DG1:DC16_T	-0.144	-0.091	-0.193	-14.032	-16.605	-0.464
1	11	P_DOC11:DG6_T	0.005	-0.171	0.127	-9.954	-11.467	2.613
1	2	P_DT2:DA15_T	-0.279	-0.017	0.013	0.568	-11.596	3.104
1	5	P_DT5:DA12_T	-0.12	-0.103	0.125	-5.359	-6.816	0.32
1	10	P_DT10:DA7_T	0.143	-0.218	0.136	-0.33	-16.56	0.669

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.