3OHA: Base Pair Morphology Step Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128

Search for released structures

NDB ID: NA0698 PDB ID: 3OHA

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	3	PP_DC3DC4:DG13DG14_TT	-0.082	0.498	3.436	-1.439	-4.59	39.698	1.278	-0.052	3.361	-6.728	2.11	39.977
1	4	PP_DC4DT5:DA12DG13_TT	-0.263	-0.031	3.106	0.978	0.74	28.035	-0.229	0.761	3.093	1.526	-2.018	28.062
1	6	PP_DC6DC7:DG10DG11_TT	0.671	-0.728	3.248	-1.157	1.449	30.615	-1.657	-1.494	3.184	2.74	2.189	30.67
1	7	PP_DC7DC8:DG9DG10_TT	-0.91	-1.174	3.26	0.069	6.788	27.628	-3.876	1.868	2.892	13.948	-0.143	28.434
1	8	PP_DC8DC9:DG8DG9_TT	0.217	-1.331	3.762	-3.503	3.022	37.957	-2.463	-0.831	3.616	4.625	5.362	38.228
1	9	PP_DC9DT10:DA7DG8_TT	-0.148	-1.62	3.217	-0.309	10.535	25.436	-5.707	0.245	2.371	22.722	0.666	27.5
1	1	PP_DG1DT2:DA15DC16_TT	-0.494	-0.688	2.912	-0.436	1.856	30.494	-1.631	0.861	2.873	3.525	0.828	30.552
1	2	PP_DT2DC3:DG14DA15_TT	-0.215	-0.403	3.574	-1.989	-3.269	43.898	-0.199	0.081	3.6	-4.363	2.655	44.056
1	5	PP_DT5DC6:DG11DA12_TT	0.875	0.028	3.194	3.861	0.58	37.021	-0.033	-0.862	3.266	0.911	-6.06	37.219
1	10	PP_DT10DOC11:DG6DA7_TT	-0.856	-1.309	3.488	1.783	4.24	27.428	-3.771	2.222	3.193	8.863	-3.726	27.803

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.