A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: NA0700  PDB ID: 3OHB 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11T_8OG6:DOC11_P-0.155-0.1610.1056.844-12.0421.001
12T_DA7:DT10_P-0.063-0.2050.117-0.272-18.8120.738
17T_DA12:DT5_P0.012-0.0820.0724.006-8.301-0.072
110T_DA15:DT2_P0.27-0.054-0.153-1.117-10.9560.779
111T_DC16:DG1_P0.111-0.139-0.12711.928-16.676-0.306
13T_DG8:DC9_P-0.339-0.230.0989.216-2.9780.951
14T_DG9:DC8_P-0.09-0.187-0.404-9.007-5.374-0.353
15T_DG10:DC7_P-0.445-0.199-0.313-9.231-4.390.269
16T_DG11:DC6_P-0.035-0.159-0.232-2.416-5.551-0.603
18T_DG13:DC4_P-0.029-0.1610.33614.671-3.319-1.052
19T_DG14:DC3_P-0.189-0.1090.27611.887-12.995-0.577

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.