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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID:
NA0700
PDB ID:
3OHB
 
Base Pair Morphology Step Parameters
CSV Format
Model Number
Step Number
Step Name
Shift
Slide
Rise
Tilt
Roll
Twist
X-Displacement
Y-Displacement
Helical Rise
Inclination
Tip
Helical Twist
1
1
TT_8OG6DA7:DT10DOC11_PP
0.918
-1.358
3.457
-1.627
4.538
29.156
-3.645
-2.152
3.159
8.938
3.204
29.544
1
2
TT_DA7DG8:DC9DT10_PP
-0.2
-1.539
3.042
-1.163
10.528
28.313
-4.775
0.183
2.339
20.632
2.279
30.191
1
7
TT_DA12DG13:DC4DT5_PP
0.37
-0.01
3.089
-0.929
1.643
28.281
-0.378
-0.957
3.07
3.358
1.899
28.343
1
10
TT_DA15DC16:DG1DT2_PP
0.558
-0.627
2.953
-0.562
1.826
31.427
-1.462
-1.122
2.903
3.367
1.036
31.483
1
3
TT_DG8DG9:DC8DC9_PP
0.106
-1.533
3.829
4.787
1.657
35.691
-2.752
0.618
3.739
2.686
-7.762
36.037
1
4
TT_DG9DG10:DC7DC8_PP
0.385
-1.252
3.368
0.713
6.15
27.365
-4.021
-0.627
3.028
12.793
-1.483
28.044
1
5
TT_DG10DG11:DC6DC7_PP
-0.239
-0.717
3.239
0.907
3.113
31.293
-1.892
0.607
3.147
5.752
-1.675
31.457
1
6
TT_DG11DA12:DT5DC6_PP
-0.927
0.06
3.23
-4.022
-0.811
36.274
0.208
0.923
3.308
-1.298
6.435
36.498
1
8
TT_DG13DG14:DC3DC4_PP
-0.066
0.473
3.399
1.379
-2.575
39.552
1.008
0.264
3.359
-3.799
-2.035
39.655
1
9
TT_DG14DA15:DT2DC3_PP
0.126
-0.334
3.601
2.329
-3.213
43.803
-0.11
0.074
3.617
-4.297
-3.115
43.974
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.