3OHB: Base Pair Morphology Step Parameters

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As of 28-Sep-2022 number of released structures: 12311

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NDB ID: NA0700 PDB ID: 3OHB

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	1	TT_8OG6DA7:DT10DOC11_PP	0.918	-1.358	3.457	-1.627	4.538	29.156	-3.645	-2.152	3.159	8.938	3.204	29.544
1	2	TT_DA7DG8:DC9DT10_PP	-0.2	-1.539	3.042	-1.163	10.528	28.313	-4.775	0.183	2.339	20.632	2.279	30.191
1	7	TT_DA12DG13:DC4DT5_PP	0.37	-0.01	3.089	-0.929	1.643	28.281	-0.378	-0.957	3.07	3.358	1.899	28.343
1	10	TT_DA15DC16:DG1DT2_PP	0.558	-0.627	2.953	-0.562	1.826	31.427	-1.462	-1.122	2.903	3.367	1.036	31.483
1	3	TT_DG8DG9:DC8DC9_PP	0.106	-1.533	3.829	4.787	1.657	35.691	-2.752	0.618	3.739	2.686	-7.762	36.037
1	4	TT_DG9DG10:DC7DC8_PP	0.385	-1.252	3.368	0.713	6.15	27.365	-4.021	-0.627	3.028	12.793	-1.483	28.044
1	5	TT_DG10DG11:DC6DC7_PP	-0.239	-0.717	3.239	0.907	3.113	31.293	-1.892	0.607	3.147	5.752	-1.675	31.457
1	6	TT_DG11DA12:DT5DC6_PP	-0.927	0.06	3.23	-4.022	-0.811	36.274	0.208	0.923	3.308	-1.298	6.435	36.498
1	8	TT_DG13DG14:DC3DC4_PP	-0.066	0.473	3.399	1.379	-2.575	39.552	1.008	0.264	3.359	-3.799	-2.035	39.655
1	9	TT_DG14DA15:DT2DC3_PP	0.126	-0.334	3.601	2.329	-3.213	43.803	-0.11	0.074	3.617	-4.297	-3.115	43.974

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.