A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 4-Dec-2019 number of released structures: 10490
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NDB ID: NA0819  PDB ID: 3OXJ 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
19A_A9:G80_A-7.086-4.9820.517-18.802-16.017-20.436
122A_A37:U67_A0.218-0.0990.0677.321-24.40312.838
13A_C3:G86_A0.59-0.3-1.03717.292-23.513.19
15A_C5:G84_A0.41-0.131-0.40710.207-12.8533.842
111A_C24:G17_A0.588-0.048-0.1427.492-23.0251.074
115A_C28:G12_A-0.252-0.053-0.2132.428-4.480.401
117A_C30:G73_A0.457-0.049-0.0697.368-17.5712.409
118A_C31:G72_A0.053-0.1690.306-13.777-2.048-3.478
124A_C39:A64_A3.256-0.693-0.57723.352-10.123-88.185
126A_C43:G60_A-0.691-0.1390.10718.307-15.5762.428
128A_C45:G58_A0.414-0.151-0.439-0.404-3.646-3.815
131A_C48:G55_A0.934-0.163-0.155-3.005-13.1953.168
12A_G2:U87_A-2.585-0.574-0.2227.165-11.293-3.733
17A_G7:C82_A-0.219-0.067-0.542-6.817-5.2432.033
18A_G8:A81_A6.864-4.7820.52810.7-3.134-13.772
110A_G10:G79_A-5.5891.2121.1221.227-13.75-32.856
112A_G25:C16_A-0.5510.067-0.0463.228-10.1918.616
113A_G26:C15_A-0.882-0.41-0.511-16.889-22.362-0.911
116A_G29:C74_A-0.023-0.072-0.365-4.469-14.5272.722
119A_G32:A71_A2.676-6.1310.1912.651-9.496114.217
120A_G35:C70_A-0.399-0.273-0.287-4.056-1.014-3.309
121A_G36:C68_A-0.164-0.280.57211.625-13.522-2.269
123A_G38:C66_A0.089-0.199-0.322-16.647-8.098-2.96
125A_G42:U61_A-2.251-0.40.46617.317-9.2488.478
130A_G47:C56_A-0.136-0.036-0.508-9.115-15.7342.194
132A_G49:C54_A-0.152-0.036-0.2131.608-7.0334.681
133A_G50:A53_A7.278-5.0040.75117.833-2.622-19.536
11A_GDP1:CCC88_A-0.879-0.048-0.397-4.3165.003-0.312
14A_U4:A85_A0.1740.155-0.128.165-11.6148.712
16A_U6:A83_A-0.0660.236-0.24812.496-16.36520.263
114A_U27:A14_A0.324-0.1750.029-12.899-16.9752.725
127A_U44:A59_A-0.407-0.17-0.3816.572-3.392-2.849
129A_U46:A57_A0.046-0.1570.037-4.489-9.5144.493
142B_A9:G80_B-7.042-5.1531.021-19.103-10.496-21.323
155B_A37:U67_B0.0270.0730.0895.74-26.59121.632
158B_A41:G62_B-6.918-4.3370.4225.709-11.6-1.584
136B_C3:G86_B-0.639-0.08-0.19214.474-12.344-0.572
138B_C5:G84_B0.394-0.119-0.3715.108-10.2324.784
144B_C24:G17_B-0.013-0.191-0.0838.29-10.850.068
148B_C28:G12_B0.448-0.024-0.4560.389-11.7595.964
150B_C30:G73_B0.1560.093-0.0147.559-21.4484.643
151B_C31:G72_B-0.203-0.1640.531-15.052-3.733-0.535
157B_C39:A64_B2.983-0.152-0.32518.206-5.323-93.881
160B_C43:G60_B0.702-0.391-0.26113.717-20.737-0.391
162B_C45:G58_B0.8320.1060.309-0.774-15.0725.631
165B_C48:G55_B-0.354-0.130.0712.835-7.08-2.358
135B_G2:U87_B-2.6-0.4060.4117.656-5.8856.554
140B_G7:C82_B-0.084-0.145-0.376-10.282-11.2322.837
141B_G8:A81_B6.956-4.9760.5188.545-10.1-13.748
143B_G10:G79_B-5.4261.2620.941-1.717-11.427-30.374
145B_G25:C16_B-0.503-0.273-0.2520.138-12.266-0.888
146B_G26:C15_B-1.072-0.3-0.045-9.004-24.11-1.578
149B_G29:C74_B0.041-0.0320.006-1.579-9.590.55
152B_G32:A71_B2.765-6.0820.3750.088-6.386119.365
153B_G35:C70_B-0.49-0.288-0.166-0.6987.235-2.202
154B_G36:C68_B-0.224-0.1190.58916.607-8.17-2.776
156B_G38:C66_B0.282-0.154-0.032-15.657-6.248-3.32
159B_G42:U61_B-1.756-0.2230.25910.792-3.635.399
164B_G47:C56_B-1.415-0.1420.027-5.257-20.3713.334
166B_G49:C54_B0.378-0.134-0.751-3.615-5.1561.508
134B_GDP1:CCC88_B-0.352-0.1650.098-5.1421.29-4.941
137B_U4:A85_B-0.207-0.114-0.3698.167-7.918-0.133
139B_U6:A83_B0.107-0.2-0.1920.101-11.18812.493
147B_U27:A14_B-0.274-0.118-0.125-3.306-18.214-5.364
161B_U44:A59_B0.683-0.313-0.0513.747-8.2820.748
163B_U46:A57_B-0.182-0.2050.389-0.733-8.89-1.834

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.