A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Aug-2019 number of released structures: 10334
Search for released structures

NDB ID: NA0819  PDB ID: 3OXJ 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
19AA_A9G10:G79G80_AA-0.89-1.1222.994-1.161-3.31444.313-1.1981.0773.087-4.3861.53644.445
121AA_A37G38:C66U67_AA-1.046-1.5973.6240.75414.49940.267-3.691.5142.88820.281-1.05542.702
13AA_C3U4:A85G86_AA-0.188-1.5763.546-8.27717.03727.884-5.428-0.9872.21831.2115.16233.603
15AA_C5U6:A83G84_AA1.214-1.6063.0861.70713.99327.031-5.415-2.0272.09127.676-3.37730.425
110AA_C24G25:C16G17_AA-0.252-1.933.175-8.01416.60326.421-5.94-0.7291.70431.86315.3832.123
114AA_C28G29:C74G12_AA0.581-2.1093.5-1.51712.04935.843-4.76-1.0862.65318.9212.38337.781
116AA_C30C31:G72G73_AA-0.781-2.4113.634-2.728.16731.959-5.6610.8982.99814.5074.83133.069
117AA_C31G32:A71G72_AA-0.171-2.7510.516-172.2725.82499.991-1.383-0.0890.4452.94287.026175.098
124AA_C43U44:A59G60_AA-0.01-1.8483.7220.4634.69934.332-3.8990.0953.4467.914-0.77934.645
126AA_C45U46:A57G58_AA0.126-1.5383.267-2.46512.133.008-4.203-0.5452.54820.4274.16135.181
129AA_C48G49:C54G55_AA0.39-1.9963.1321.19113.10923.55-6.995-0.5921.80429.362-2.66926.934
12AA_G2C3:G86U87_AA-0.74-1.873.1553.63-0.10838.326-2.8231.5533.079-0.164-5.51438.491
17AA_G7G8:A81C82_AA-1.42-0.8042.801-3.2159.77358.314-1.2391.2992.7149.9443.27159.136
18AA_G8A9:G80A81_AA-0.6970.0985.588-2.02917.476-24.479-6.292-2.0524.464-35.888-4.167-30.067
111AA_G25G26:C15C16_AA0.082-2.0483.6392.27513.66929.894-5.9180.2392.4924.885-4.14132.883
112AA_G26U27:A14C15_AA0.496-1.5833.241.7275.03338.056-3.01-0.5463.0337.672-2.63338.413
115AA_G29C30:G73C74_AA0.858-2.4352.997-1.7763.12729.321-5.355-2.0122.6736.1483.49129.535
118AA_G32G35:C70A71_AA-6.442.684-1.409103.294-144.061-39.629-0.287-2.4645.10472.76552.174-177.428
119AA_G35G36:C68C70_AA2.703-2.2672.897-9.1044.04649.012-2.916-3.7222.2124.8210.84449.953
120AA_G36A37:U67C68_AA0.899-1.5213.4383.0315.97432.821-3.649-1.053.18710.437-5.29633.48
122AA_G38C39:A64C66_AA-2.82-1.212.6491.7750.41256.28-1.3013.0682.5590.437-1.88156.307
123AA_G42C43:G60U61_AA-0.358-1.0513.206-1.4697.03137.734-2.4360.372.98110.7522.24638.387
128AA_G47C48:G55C56_AA0.171-1.0343.213-1.7837.82934.941-2.747-0.5212.9112.8312.92235.824
130AA_G49G50:A53C54_AA-1.658-0.9782.847-1.53611.44948.911-1.8521.8612.61813.6091.82650.175
11AA_GDP1G2:U87CCC88_AA0.288-1.9053.006-8.0236.08826.736-5.036-2.1292.34112.61216.6228.538
14AA_U4C5:G84A85_AA-0.347-1.3953.0771.08510.29631.272-4.0010.7742.49118.477-1.94632.9
16AA_U6G7:C82A83_AA-1.128-1.4553.7320.76414.4330.957-4.8812.0512.77325.373-1.34334.089
113AA_U27C28:G12A14_AA-0.712-1.5982.8733.2797.72711.454-11.5255.0281.2933.443-14.19314.192
125AA_U44C45:G58A59_AA-0.034-1.6663.4361.0298.11933.48-4.0690.2162.96113.839-1.75334.438
127AA_U46G47:C56A57_AA-0.173-1.3743.2541.88416.95330.559-4.5850.5432.229.462-3.27534.898
139BB_A9G10:G79G80_BB-0.701-1.0953.0562.3720.49343.584-1.5171.1543.0030.663-3.19143.648
151BB_A37G38:C66U67_BB-1.323-1.7563.709-0.3339.11840.437-3.5351.8323.26612.9910.47541.411
153BB_A41G42:U61G62_BB-0.058-0.8763.241-10.36510.71752.226-1.601-0.5552.98211.90111.5154.169
133BB_C3U4:A85G86_BB-0.208-1.8623.407-1.5829.031.838-4.7390.1072.79815.9992.81333.091
135BB_C5U6:A83G84_BB0.68-1.5433.212-1.21615.10730.547-4.747-1.3332.226.7082.1534.02
140BB_C24G25:C16G17_BB-0.613-2.0173.347-2.55112.0229.802-5.6070.6882.41622.224.71632.182
144BB_C28G29:C74G12_BB0.739-1.7393.269-4.08816.01431.346-4.916-1.742.05827.3856.99135.34
146BB_C30C31:G72G73_BB-0.513-2.1933.654-4.559.92433.14-5.2230.1422.93816.8397.7234.844
147BB_C31G32:A71G72_BB-0.486-2.7670.493-170.2282.44190.529-1.390.0060.6641.24186.522173.138
155BB_C43U44:A59G60_BB-0.429-1.6293.472-1.8113.08731.099-4.8710.4542.61423.1443.20133.725
157BB_C45U46:A57G58_BB-0.367-2.0983.142-1.5723.88825.363-5.7190.4192.8118.7793.54925.702
160BB_C48G49:C54G55_BB0.213-1.443.4874.43410.51434.234-3.8340.2912.93617.275-7.28536.032
132BB_G2C3:G86U87_BB-0.5-1.3993.1422.5371.26836.601-2.3861.1243.0542.015-4.03336.707
137BB_G7G8:A81C82_BB-1.341-0.6022.905-2.9368.00959.935-0.9431.2052.8687.9732.92360.483
138BB_G8A9:G80A81_BB-0.5840.035.503-3.17613.479-26.184-4.854-2.2754.811-27.446-6.467-29.564
141BB_G25G26:C15C16_BB0.722-2.1283.5111.4858.14325.21-6.75-1.1892.73818.047-3.2926.514
142BB_G26U27:A14C15_BB-0.731-1.2322.946-0.3856.89341.551-2.3370.9832.7249.6360.53842.096
145BB_G29C30:G73C74_BB1.12-2.3392.8862.85.24929.958-5.316-1.6612.5410.03-5.34930.53
148BB_G32G35:C70A71_BB-5.9962.137-2.151105.848-142.168-27.858-0.294-2.4224.62171.92353.549-177.326
149BB_G35G36:C68C70_BB2.782-2.0792.735-8.7244.66950.142-2.653-3.6772.0675.44810.17951.047
150BB_G36A37:U67C68_BB0.975-1.3823.5333.6556.5134.943-3.251-1.0313.31210.69-6.00235.707
152BB_G38C39:A64C66_BB-2.816-1.4732.8464.901-0.14453.542-1.6223.3692.602-0.159-5.42753.749
154BB_G42C43:G60U61_BB-0.439-0.9733.1582.0419.04444.408-2.0140.7392.89511.813-2.66545.317
159BB_G47C48:G55C56_BB-1.426-1.6863.158-7.9740.94235.105-2.8631.1653.3461.53613.0135.983
131BB_GDP1G2:U87CCC88_BB0.665-2.1742.693-3.5265.1622.664-6.616-2.5052.02912.828.7623.499
134BB_U4C5:G84A85_BB-0.089-1.4943.284-0.93811.06333.779-3.9650.0172.6818.4311.56235.506
136BB_U6G7:C82A83_BB-0.854-1.5543.481.74312.38730.843-4.731.7762.62722.18-3.12233.226
143BB_U27C28:G12A14_BB-0.227-1.0423.1864.9563.72925.01-3.3251.822.9038.445-11.22625.756
156BB_U44C45:G58A59_BB0.735-1.4143.1643.56610.01534.651-3.573-0.7212.72416.345-5.8236.197
158BB_U46G47:C56A57_BB0.712-1.4192.8911.70617.25426.788-5.017-1.0591.72533.192-3.28231.823

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.