A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
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NDB ID: NA0780  PDB ID: 3OY9 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14C_DA7:DT13_D0.028-0.087-0.16-2.617-13.102-1.945
18C_DA11:DT9_D0.06-0.171-0.0744.119-14.873-0.037
19C_DA12:DT8_D0.124-0.0850.032-1.61-11.9411.28
116C_DA19:DT1_D0.133-0.316-0.4551.082-9.2860.709
13C_DC6:DG14_D0.016-0.045-0.1870.7451.971-1.172
113C_DC16:DG4_D0.169-0.038-0.013-7.851-10.7460.576
115C_DC18:DG2_D-0.13-0.2970.1554.425-1.126-0.713
11C_DG4:DC16_D-0.267-0.062-0.657-32.382-16.172-1.599
16C_DG9:DC11_D-0.086-0.1660.0428.8026.689-3.7
17C_DG10:DC10_D-0.296-0.1110.04915.328-9.944-1.758
114C_DG17:DC3_D-0.44-0.4110.02-2.937-6.059-0.592
12C_DT5:DA15_D-0.175-0.128-0.001-16.588-5.3522.643
15C_DT8:DA12_D-0.07-0.1230.013-6.146-14.9695.943
110C_DT13:DA7_D-0.061-0.219-0.0821.734-14.1572.064
111C_DT14:DA6_D-0.102-0.315-0.133-3.028-16.2011.801
112C_DT15:DA5_D-0.237-0.246-0.151-4.099-11.683-3.047

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.