A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 4-Dec-2019 number of released structures: 10490
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NDB ID: NA0781  PDB ID: 3OYA 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14C_DA7:DT13_D-0.079-0.154-0.26-2.28-15.945-2.99
18C_DA11:DT9_D0.096-0.177-0.0924.225-10.7013.637
19C_DA12:DT8_D0.184-0.0960.111-0.93-12.771.626
116C_DA19:DT1_D-0.152-0.311-0.542-3.616-9.6258.935
13C_DC6:DG14_D0.166-0.073-0.059-0.1622.4490.094
113C_DC16:DG4_D0.147-0.041-0.057-4.511-12.6031.948
115C_DC18:DG2_D-0.181-0.238-0.1415.6381.0020.709
11C_DG4:DC16_D-0.121-0.003-0.719-34.572-18.988-3.844
16C_DG9:DC11_D0.079-0.1490.1768.4085.971-3.637
17C_DG10:DC10_D-0.281-0.1140.04614.68-8.684-0.976
114C_DG17:DC3_D-0.067-0.344-0.102-2.822-11.309-0.731
12C_DT5:DA15_D-0.011-0.230.106-15.675-5.2310.642
15C_DT8:DA12_D0.052-0.1570.083-7.941-15.5715.274
110C_DT13:DA7_D0.058-0.2420.0-0.489-15.3270.875
111C_DT14:DA6_D-0.108-0.303-0.16-3.451-15.461-1.395
112C_DT15:DA5_D-0.121-0.225-0.184-2.864-11.485-4.349

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.