A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Aug-2019 number of released structures: 10334
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NDB ID: NA0781  PDB ID: 3OYA 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
14CC_DA7DT8:DA12DT13_DD0.556-0.3483.348-1.2574.54231.167-1.498-1.2613.2428.3932.32331.513
18CC_DA11DA12:DT8DT9_DD-0.345-0.0073.26-3.066-1.97539.4590.2210.153.273-2.9174.52939.621
19CC_DA12DT13:DA7DT8_DD-0.159-0.5253.160.535-2.42432.75-0.5260.3713.187-4.291-0.94632.841
13CC_DC6DA7:DT13DG14_DD-1.5410.9673.405-1.7647.82735.3930.3642.2073.60112.6742.85736.263
113CC_DC16DG17:DC3DG4_DD-0.2380.8233.354-1.99414.3735.247-0.7110.0923.4322.5853.13438.028
115CC_DC18DA19:DT1DG2_DD0.704-0.0333.6694.29413.55629.473-2.737-0.4043.39724.901-7.88832.655
11CC_DG4DT5:DA15DC16_DD0.7360.0782.881-5.4624.4335.506-0.415-1.8512.7317.1778.8536.174
16CC_DG9DG10:DC10DC11_DD-0.7830.513.1870.285.63629.486-0.161.5693.21910.947-0.54430.009
17CC_DG10DA11:DT9DC10_DD0.097-0.0983.4961.583.21540.425-0.5240.0483.484.641-2.28140.577
114CC_DG17DC18:DG2DC3_DD0.761-0.2533.072-1.3380.90628.901-0.692-1.7983.0251.8142.67828.945
12CC_DT5DC6:DG14DA15_DD0.4030.753.1080.6657.4730.003-0.012-0.633.20514.152-1.2630.905
15CC_DT8DG9:DC11DA12_DD0.6221.9223.0031.7614.74839.5832.294-0.7173.2266.977-2.58739.893
110CC_DT13DT14:DA6DA7_DD-0.065-0.2873.2651.504-4.41437.4630.1270.2953.271-6.84-2.3337.742
111CC_DT14DT15:DA5DA6_DD0.092-0.0473.2211.178-3.50539.6860.3310.03.214-5.15-1.73139.851
112CC_DT15DC16:DG4DA5_DD0.04-0.0893.285-1.5070.47935.299-0.218-0.2893.2790.792.48435.334

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.