A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
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NDB ID: NA0837  PDB ID: 3PMN 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
17B_DA8:DT4_C0.1-0.1520.1243.256-1.471-0.299
11B_DC1:DG4_D-0.402-0.1790.127-11.401-1.589-4.027
14B_DC4:DG1_D0.363-0.108-0.13415.607-11.8021.116
18B_DC9:DG3_C0.015-0.0540.471.327-11.541-2.597
12B_DG2:DC3_D0.085-0.328-0.0867.6961.203-0.875
13B_DG3:DC2_D-0.32-0.0420.0079.1410.098-0.802
110B_DG11:DC1_C-0.044-0.2540.52920.752-16.478-1.295
15B_DT6:DG6_C2.148-0.4880.422-4.211-8.628-0.132
16B_DT7:DA5_C-0.257-0.123-0.025.087-10.2731.232
19B_DT10:DA2_C0.008-0.0650.0715.223-10.8062.037

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.