3PO3: Base Pair Morphology Parameters

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As of 1-Dec-2021 number of released structures: 11785

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NDB ID: NA0884 PDB ID: 3PO3

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	4	N_DA5:DT13_T	-0.478	-0.685	-2.193	-22.95	-32.057	14.571
1	5	N_DA6:DT12_T	0.001	-0.046	-0.805	-7.622	-40.237	-1.188
1	7	N_DC8:DG10_T	0.286	-0.031	-0.303	-3.375	7.548	-2.17
1	1	N_DG2:DC16_T	0.592	0.051	-0.76	-21.152	-5.517	-3.022
1	2	N_DG3:DC15_T	0.57	0.018	0.3	-7.107	-1.845	-2.765
1	6	N_DG7:DC11_T	0.047	0.109	-0.747	-30.645	-22.476	0.918
1	3	N_DT4:DA14_T	-0.312	0.054	-0.56	12.886	-20.626	-2.559
1	8	P_C7:DG21_T	0.669	-0.241	-0.926	2.553	-11.365	1.183
1	9	P_C9:DG19_T	0.554	-0.243	-1.366	21.186	-8.457	-2.823
1	10	P_C10:DG18_T	-0.398	-0.066	0.895	-6.192	-9.593	-5.179

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.