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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 25-May-2022 number of released structures: 12098
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NDB ID:
NA0884
PDB ID:
3PO3
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
4
N_DA5:DT13_T
-0.478
-0.685
-2.193
-22.95
-32.057
14.571
1
5
N_DA6:DT12_T
0.001
-0.046
-0.805
-7.622
-40.237
-1.188
1
7
N_DC8:DG10_T
0.286
-0.031
-0.303
-3.375
7.548
-2.17
1
1
N_DG2:DC16_T
0.592
0.051
-0.76
-21.152
-5.517
-3.022
1
2
N_DG3:DC15_T
0.57
0.018
0.3
-7.107
-1.845
-2.765
1
6
N_DG7:DC11_T
0.047
0.109
-0.747
-30.645
-22.476
0.918
1
3
N_DT4:DA14_T
-0.312
0.054
-0.56
12.886
-20.626
-2.559
1
8
P_C7:DG21_T
0.669
-0.241
-0.926
2.553
-11.365
1.183
1
9
P_C9:DG19_T
0.554
-0.243
-1.366
21.186
-8.457
-2.823
1
10
P_C10:DG18_T
-0.398
-0.066
0.895
-6.192
-9.593
-5.179
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.