3PO3: Base Pair Morphology Step Parameters

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NDB ID: NA0884 PDB ID: 3PO3

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	4	NN_DA5DA6:DT12DT13_TT	-0.838	2.032	3.028	-10.959	-6.641	43.613	3.172	0.198	2.827	-8.717	14.385	45.369
1	5	NN_DA6DG7:DC11DT12_TT	0.239	0.542	3.912	-7.816	4.684	45.051	0.209	-1.117	3.856	6.04	10.079	45.916
1	1	NN_DG2DG3:DC15DC16_TT	-1.889	-0.184	3.107	-14.713	-2.372	37.933	0.015	0.987	3.576	-3.489	21.641	40.655
1	2	NN_DG3DT4:DA14DC15_TT	-0.086	-0.227	3.277	12.5	-12.995	29.845	1.642	2.089	2.878	-22.801	-21.934	34.762
1	6	NN_DG7DC8:DG10DC11_TT	0.646	0.358	3.049	-4.007	-5.498	40.847	1.046	-1.307	2.906	-7.812	5.693	41.386
1	3	NN_DT4DA5:DT13DA14_TT	0.468	1.169	4.509	12.427	24.42	29.814	-2.592	1.504	4.203	38.732	-19.71	40.281
1	7	PP_C7C9:DG19DG21_TT	-0.648	-2.202	5.933	0.12	13.224	58.355	-3.369	0.661	5.365	13.375	-0.122	59.706
1	8	PP_C9C10:DG18DG19_TT	0.147	-1.968	4.446	-13.088	3.254	28.98	-4.363	-3.417	3.793	6.103	24.547	31.903

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.