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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 25-May-2022 number of released structures: 12098
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NDB ID:
NA0884
PDB ID:
3PO3
 
Base Pair Morphology Step Parameters
CSV Format
Model Number
Step Number
Step Name
Shift
Slide
Rise
Tilt
Roll
Twist
X-Displacement
Y-Displacement
Helical Rise
Inclination
Tip
Helical Twist
1
4
NN_DA5DA6:DT12DT13_TT
-0.838
2.032
3.028
-10.959
-6.641
43.613
3.172
0.198
2.827
-8.717
14.385
45.369
1
5
NN_DA6DG7:DC11DT12_TT
0.239
0.542
3.912
-7.816
4.684
45.051
0.209
-1.117
3.856
6.04
10.079
45.916
1
1
NN_DG2DG3:DC15DC16_TT
-1.889
-0.184
3.107
-14.713
-2.372
37.933
0.015
0.987
3.576
-3.489
21.641
40.655
1
2
NN_DG3DT4:DA14DC15_TT
-0.086
-0.227
3.277
12.5
-12.995
29.845
1.642
2.089
2.878
-22.801
-21.934
34.762
1
6
NN_DG7DC8:DG10DC11_TT
0.646
0.358
3.049
-4.007
-5.498
40.847
1.046
-1.307
2.906
-7.812
5.693
41.386
1
3
NN_DT4DA5:DT13DA14_TT
0.468
1.169
4.509
12.427
24.42
29.814
-2.592
1.504
4.203
38.732
-19.71
40.281
1
7
PP_C7C9:DG19DG21_TT
-0.648
-2.202
5.933
0.12
13.224
58.355
-3.369
0.661
5.365
13.375
-0.122
59.706
1
8
PP_C9C10:DG18DG19_TT
0.147
-1.968
4.446
-13.088
3.254
28.98
-4.363
-3.417
3.793
6.103
24.547
31.903
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.