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As of 14-Aug-2019 number of released structures: 10334
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NDB ID: NA0855  PDB ID: 3PTA 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
18B_DA8:DT31_C0.140.034-0.0728.898-11.935-6.97
117B_DA17:DT22_C0.2080.025-0.684-14.096-23.304-11.368
12B_DC2:DG37_C0.067-0.016-0.1741.494-4.966-4.734
13B_DC3:DG36_C0.034-0.188-0.5414.8424.46-8.77
14B_DC4:DG35_C-0.3630.037-0.467.919-7.279-8.781
110B_DC10:DG29_C0.0030.016-0.158-6.336-0.15-1.174
111B_DC11:DG28_C0.131-0.0020.372-14.057-2.6850.64
113B_DC13:DG26_C0.141-0.0440.204-16.74219.0981.566
114B_DC14:DG25_C0.103-0.080.422.056-14.071-3.392
116B_DC16:DG23_C0.213-0.0650.0561.593-4.0892.628
15B_DG5:DC34_C0.187-0.057-0.034-0.989-9.138-1.532
17B_DG7:DC32_C-0.191-0.0620.2535.772-1.261-2.246
19B_DG9:DC30_C0.074-0.0190.172.787-2.999-0.664
115B_DG15:DC24_C-0.07-0.0530.3225.352-3.854-4.47
118B_DG18:DC21_C0.255-0.328-1.488-24.745-18.772-3.426
119B_DG19:DC20_C0.1680.012-0.68-22.89716.296-3.204
11B_DT1:DA38_C-0.414-0.018-0.517-7.866-12.869-7.981
16B_DT6:DA33_C-0.260.14-0.0598.9762.165-10.604
112B_DT12:DA27_C-0.06-0.0060.39-13.563-2.625-1.457

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.