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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID:
NA0904
PDB ID:
3Q0F
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
4
B_DA4:DT7_C
0.83
-0.165
0.845
4.948
-9.47
-8.754
1
6
B_DA7:DT4_C
-0.181
-0.425
-0.12
-15.56
4.228
-5.331
1
1
B_DC1:DG10_C
-0.384
-0.23
1.057
-30.085
-2.958
-4.122
1
3
B_DG3:DC8_C
-1.778
-0.703
0.533
-2.489
-5.672
-18.923
1
5
B_DG5:DC6_C
0.163
-0.125
0.639
8.083
-10.459
-2.231
1
7
B_DG8:DC3_C
-0.881
-0.045
-0.336
-7.71
3.727
7.515
1
2
B_DT2:DA9_C
-1.823
-0.333
1.165
-21.554
-5.691
-6.585
1
8
B_DT9:DA2_C
-0.197
-0.227
-0.359
12.243
6.394
-5.032
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.
