A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 16-Oct-2019 number of released structures: 10422
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NDB ID: NA0941  PDB ID: 3QMC 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14B_DA4:DT9_C0.086-0.193-0.066-6.628-7.5542.079
12B_DC2:DG11_C0.043-0.0550.183-6.627-7.191.405
13B_DC3:DG10_C0.39-0.2130.01-0.733-9.290.404
15B_DC5:DG8_C0.183-0.170.245-5.796-6.244-0.284
16B_DC6:DG7_C0.361-0.2060.085-2.001-2.5091.718
18B_DC8:DG5_C0.151-0.1910.226-8.78-1.464-1.775
112B_DC12:DG1_C0.477-0.226-0.076-2.124-4.611-0.052
11B_DG1:DC12_C-0.364-0.02-0.0130.237-1.1561.402
17B_DG7:DC6_C-0.198-0.2890.313-3.442-10.7370.744
110B_DG10:DC3_C-0.48-0.2760.0352.716-9.7240.581
111B_DG11:DC2_C-0.188-0.1060.1725.436-11.821-1.281
19B_DT9:DA4_C-0.064-0.157-0.1664.009-0.8830.286

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.