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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID:
NA1063
PDB ID:
3REI
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
1
I_DA-72:DT72_J
-0.754
-0.369
0.054
-21.409
4.632
-0.983
1
4
I_DA-69:DT69_J
0.302
-0.097
-0.767
-5.047
-20.438
5.523
1
5
I_DA-68:DT68_J
1.157
0.186
0.043
2.525
-15.122
5.923
1
7
I_DA-66:DT66_J
0.228
0.132
0.098
16.031
-11.978
-1.892
1
11
I_DA-62:DT62_J
-0.579
-0.357
0.773
15.699
-9.946
-3.289
1
16
I_DA-56:DT56_J
0.801
0.048
0.35
8.598
-23.033
3.671
1
18
I_DA-54:DT54_J
0.924
0.249
-0.67
-11.591
-15.223
-9.499
1
20
I_DA-52:DT52_J
-0.912
-0.077
-0.034
-6.9
-10.227
1.714
1
22
I_DA-49:DT49_J
-0.583
0.307
-0.154
-2.203
-6.744
2.114
1
25
I_DA-46:DT46_J
0.342
-0.084
0.618
23.991
-20.084
-9.112
1
26
I_DA-45:DT45_J
1.022
-0.191
0.458
25.591
-19.064
-3.19
1
27
I_DA-44:DT44_J
0.296
0.069
0.205
12.183
-32.782
5.677
1
28
I_DA-43:DT43_J
0.618
0.256
0.396
15.166
-20.349
8.42
1
33
I_DA-38:DT38_J
-0.981
-0.005
0.185
-12.314
-4.724
-9.488
1
39
I_DA-32:DT32_J
-0.891
0.129
-0.347
-5.521
-21.058
17.873
1
40
I_DA-31:DT31_J
-0.701
0.077
-0.97
-7.641
-20.527
10.846
1
41
I_DA-30:DT30_J
-1.214
-0.179
-0.223
-3.973
-6.303
2.634
1
49
I_DA-22:DT22_J
-0.091
0.229
0.882
12.69
8.458
0.799
1
52
I_DA-19:DT19_J
-0.845
-0.534
-0.456
8.657
-19.351
-0.657
1
53
I_DA-18:DT18_J
0.777
-0.007
0.068
0.579
-30.408
2.95
1
54
I_DA-17:DT17_J
0.219
0.349
0.347
-10.345
-18.221
4.1
1
55
I_DA-16:DT16_J
-0.071
-0.327
0.856
1.166
-14.051
-11.371
1
59
I_DA-12:DT12_J
-0.699
-0.269
0.166
-2.456
-3.463
-0.88
1
65
I_DA-6:DT6_J
0.525
-0.081
0.02
-2.088
-21.745
-0.08
1
70
I_DA-1:DT1_J
0.021
-0.091
0.177
1.841
-9.23
-2.257
1
71
I_DA0:DT0_J
0.762
-0.2
0.139
1.07
-8.987
1.074
1
74
I_DA3:DT-3_J
-0.234
0.123
0.277
4.503
-23.731
-4.038
1
79
I_DA8:DT-8_J
0.048
-0.085
0.38
7.371
-11.938
4.494
1
80
I_DA9:DT-9_J
0.202
-0.155
-0.054
7.656
-17.86
-0.491
1
82
I_DA11:DT-11_J
0.208
-0.191
-0.127
-5.272
-16.628
10.099
1
92
I_DA21:DT-21_J
-0.774
-0.303
-0.743
-12.481
-13.403
-12.778
1
96
I_DA25:DT-25_J
1.756
0.052
0.843
9.01
-28.704
-5.171
1
99
I_DA28:DT-28_J
-0.158
0.24
0.193
-5.507
-18.578
9.719
1
105
I_DA35:DT-35_J
0.104
-0.238
-0.391
-16.281
-14.359
-5.392
1
106
I_DA36:DT-36_J
-0.027
-0.135
-0.197
-3.368
-20.243
-0.123
1
107
I_DA37:DT-37_J
-0.067
-0.427
-0.241
-1.121
-10.64
3.806
1
109
I_DA39:DT-39_J
-0.567
-0.463
-0.165
2.471
-12.732
-4.97
1
111
I_DA41:DT-41_J
0.592
-0.286
-0.446
-16.613
-24.178
-5.223
1
119
I_DA50:DT-50_J
0.175
0.186
-0.004
15.629
-39.119
5.672
1
121
I_DA53:DT-53_J
0.378
0.064
0.29
0.846
-3.095
0.74
1
127
I_DA59:DT-59_J
0.167
0.3
0.798
18.837
-16.295
6.858
1
133
I_DA65:DT-65_J
-0.355
-0.004
0.41
-5.302
-3.919
-3.051
1
135
I_DA67:DT-67_J
-0.342
-0.209
-0.106
-14.439
-7.988
-1.95
1
139
I_DA71:DT-71_J
1.133
-0.236
-0.413
-7.319
6.918
-0.045
1
3
I_DC-70:DG70_J
-1.025
0.11
-0.243
1.1
-21.336
0.304
1
9
I_DC-64:DG64_J
-1.133
0.291
-0.084
2.332
-16.692
10.269
1
10
I_DC-63:DG63_J
-1.868
0.312
-0.461
-0.985
-8.096
7.048
1
12
I_DC-61:DG61_J
-0.927
0.006
0.154
15.106
-7.891
-2.975
1
13
I_DC-60:DG60_J
-0.805
0.389
-0.115
-0.694
-16.422
14.662
1
15
I_DC-57:DG57_J
0.685
0.204
0.153
6.711
-10.057
9.255
1
21
I_DC-51:DG51_J
-0.066
-0.106
0.404
4.707
-12.64
-2.977
1
23
I_DC-48:DG48_J
-0.046
-0.077
0.548
-2.531
-2.69
-1.238
1
24
I_DC-47:DG47_J
0.138
0.35
-0.295
21.149
-7.863
7.867
1
42
I_DC-29:DG29_J
-1.065
0.365
0.227
-7.388
-9.498
3.549
1
45
I_DC-26:DG26_J
0.77
0.097
-0.458
4.435
-11.659
10.88
1
47
I_DC-24:DG24_J
-0.693
-0.091
0.473
-7.7
-8.452
-0.417
1
48
I_DC-23:DG23_J
0.328
0.469
0.011
-8.109
-18.668
3.534
1
51
I_DC-20:DG20_J
0.053
-0.034
0.038
14.164
-11.0
2.72
1
58
I_DC-13:DG13_J
-0.845
0.807
0.549
-12.911
-16.849
16.695
1
64
I_DC-7:DG7_J
0.978
0.079
-0.894
16.141
-12.019
9.931
1
67
I_DC-4:DG4_J
-0.839
-0.108
0.419
-5.059
-13.95
-2.294
1
73
I_DC2:DG-2_J
0.162
-0.193
0.249
-4.178
-4.7
-1.334
1
76
I_DC5:DG-5_J
0.622
-0.445
-0.223
5.377
-8.294
-3.624
1
81
I_DC10:DG-10_J
0.014
-0.108
-0.953
18.904
-1.024
1.158
1
85
I_DC14:DG-14_J
0.719
-0.153
0.295
-3.819
5.555
2.954
1
86
I_DC15:DG-15_J
-0.517
0.137
-0.365
1.4
-1.581
3.739
1
98
I_DC27:DG-27_J
0.959
0.235
0.353
13.979
-28.084
6.394
1
103
I_DC33:DG-33_J
0.092
0.338
0.671
-29.913
2.237
-1.511
1
104
I_DC34:DG-34_J
-0.059
-0.198
1.108
-13.54
-4.626
-8.649
1
110
I_DC40:DG-40_J
-0.396
0.132
-0.514
9.29
-26.833
2.812
1
112
I_DC42:DG-42_J
-0.437
-0.131
0.13
-0.375
-10.959
0.651
1
123
I_DC55:DG-55_J
-0.487
-0.052
1.107
-19.616
-17.277
3.998
1
126
I_DC58:DG-58_J
0.241
-0.043
-0.104
4.754
-4.573
0.722
1
14
I_DG-58:DC58_J
-0.279
0.476
-0.04
-16.462
-6.774
7.841
1
17
I_DG-55:DC55_J
1.218
0.54
0.285
5.782
-19.43
6.265
1
29
I_DG-42:DC42_J
-0.286
0.842
0.157
-3.457
-8.39
7.848
1
31
I_DG-40:DC40_J
-1.001
-0.039
-0.276
-2.047
-9.955
7.0
1
37
I_DG-34:DC34_J
-0.191
-0.312
1.023
-7.06
-11.513
-2.951
1
38
I_DG-33:DC33_J
-0.137
-0.151
1.441
14.471
8.027
-0.081
1
44
I_DG-27:DC27_J
-0.213
-0.199
-0.402
-21.033
-24.053
0.636
1
56
I_DG-15:DC15_J
0.813
0.269
0.289
6.632
-1.809
5.155
1
57
I_DG-14:DC14_J
0.476
0.187
-0.258
-13.185
-37.678
2.573
1
61
I_DG-10:DC10_J
-0.692
-0.219
-0.164
-14.42
0.3
5.926
1
66
I_DG-5:DC5_J
0.336
-0.014
0.196
2.746
-17.66
-2.572
1
69
I_DG-2:DC2_J
-0.612
0.3
0.368
9.234
-1.464
8.372
1
75
I_DG4:DC-4_J
-0.191
-0.163
-0.038
-0.456
-23.923
-2.393
1
78
I_DG7:DC-7_J
-0.084
-0.184
-0.928
-19.33
-3.848
-1.86
1
84
I_DG13:DC-13_J
-0.021
0.4
-0.023
2.523
4.039
8.851
1
91
I_DG20:DC-20_J
-0.406
0.071
0.176
8.369
-3.128
2.947
1
94
I_DG23:DC-23_J
-0.897
0.323
-0.725
6.091
-27.297
-5.181
1
95
I_DG24:DC-24_J
0.209
0.054
-0.618
-5.631
-3.587
9.056
1
97
I_DG26:DC-26_J
-0.521
-0.014
1.287
30.32
0.983
1.606
1
100
I_DG29:DC-29_J
0.002
0.116
1.199
3.507
-4.037
6.566
1
117
I_DG47:DC-47_J
1.073
0.808
0.052
-18.51
-23.97
10.41
1
118
I_DG48:DC-48_J
-0.785
0.087
0.139
1.026
-12.123
3.58
1
120
I_DG51:DC-51_J
-0.493
0.688
0.571
4.635
-18.7
9.883
1
125
I_DG57:DC-57_J
0.001
-0.19
0.84
-6.863
-7.65
-0.063
1
128
I_DG60:DC-60_J
1.259
0.441
0.449
12.458
-21.175
16.119
1
129
I_DG61:DC-61_J
0.29
-0.331
-0.451
-9.755
-19.308
-0.522
1
131
I_DG63:DC-63_J
-0.491
-0.335
-0.328
1.663
-7.092
-2.655
1
132
I_DG64:DC-64_J
0.458
0.231
-0.018
7.142
-10.02
7.941
1
138
I_DG70:DC-70_J
-0.009
-0.25
-0.86
-7.283
-10.987
2.336
1
2
I_DT-71:DA71_J
-0.155
0.042
-0.071
-2.752
-12.982
-3.37
1
6
I_DT-67:DA67_J
-0.392
-0.1
-0.12
20.795
-3.693
-4.706
1
8
I_DT-65:DA65_J
0.044
0.274
0.081
7.59
-8.13
-2.716
1
19
I_DT-53:DA53_J
0.309
0.02
0.279
5.133
-9.527
0.372
1
30
I_DT-41:DA41_J
0.573
-0.15
-0.567
3.928
-17.042
1.19
1
32
I_DT-39:DA39_J
0.462
0.137
-1.269
11.377
-15.721
-0.027
1
34
I_DT-37:DA37_J
-0.146
-0.405
1.441
-8.321
-9.048
1.532
1
35
I_DT-36:DA36_J
-0.051
-0.378
1.25
-17.018
-22.041
-4.367
1
36
I_DT-35:DA35_J
0.065
-0.152
1.264
-14.13
-26.694
3.131
1
43
I_DT-28:DA28_J
-0.469
-0.011
0.499
-6.421
-5.1
3.041
1
46
I_DT-25:DA25_J
-0.461
-0.01
0.307
-0.49
-40.286
0.908
1
50
I_DT-21:DA21_J
-0.193
-0.013
-0.168
16.317
-14.742
-5.664
1
60
I_DT-11:DA11_J
0.116
0.022
0.047
24.73
-0.933
6.152
1
62
I_DT-9:DA9_J
0.405
-0.205
0.218
-11.152
-21.293
2.916
1
63
I_DT-8:DA8_J
0.125
-0.336
-0.065
-1.195
-12.868
1.711
1
68
I_DT-3:DA3_J
0.202
-0.167
-0.062
-5.953
-14.182
-9.28
1
72
I_DT1:DA-1_J
0.182
-0.021
-0.237
-0.932
-17.112
2.587
1
77
I_DT6:DA-6_J
-0.402
-0.238
0.106
3.952
-32.032
-6.527
1
83
I_DT12:DA-12_J
0.037
0.043
-0.508
-1.788
-7.22
10.635
1
87
I_DT16:DA-16_J
-0.772
-0.034
0.411
-7.663
8.223
3.097
1
88
I_DT17:DA-17_J
-0.822
-0.082
-0.056
-2.335
-16.152
3.813
1
89
I_DT18:DA-18_J
-1.018
0.237
-0.61
1.519
-26.161
11.878
1
90
I_DT19:DA-19_J
1.514
-0.394
-0.292
-3.126
-11.467
-5.091
1
93
I_DT22:DA-22_J
0.57
0.238
0.129
-4.081
-13.029
2.123
1
101
I_DT31:DA-31_J
0.425
0.37
-0.125
-8.02
-17.917
8.722
1
102
I_DT32:DA-32_J
0.335
0.327
-0.864
-21.326
-27.369
0.318
1
108
I_DT38:DA-38_J
-0.088
-0.004
0.074
12.178
-8.529
-9.067
1
113
I_DT43:DA-43_J
-0.308
-0.112
0.198
-10.742
-13.205
-6.258
1
114
I_DT44:DA-44_J
0.507
0.032
0.42
-11.885
-9.551
-3.025
1
115
I_DT45:DA-45_J
0.795
-0.143
0.743
-21.348
-23.287
6.826
1
116
I_DT46:DA-46_J
0.195
0.449
-0.134
-22.592
-23.832
-2.316
1
122
I_DT54:DA-54_J
-0.409
0.094
-0.076
6.726
-14.783
7.124
1
124
I_DT56:DA-56_J
-0.233
-0.344
0.93
-10.382
-6.798
-6.025
1
130
I_DT62:DA-62_J
0.362
-0.396
-0.066
-3.044
-10.53
-2.984
1
134
I_DT66:DA-66_J
0.212
-0.203
0.39
0.345
-11.153
0.615
1
136
I_DT68:DA-68_J
-0.427
-0.321
0.415
-6.612
-16.382
-4.221
1
137
I_DT69:DA-69_J
0.341
-0.278
-0.234
-2.226
-7.767
-8.648
1
140
I_DT72:DA-72_J
-0.524
-0.428
-0.325
7.973
-0.404
-5.445
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.