3REI: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 28-Sep-2022 number of released structures: 12311

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NDB ID: NA1063 PDB ID: 3REI

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	1	I_DA-72:DT72_J	-0.754	-0.369	0.054	-21.409	4.632	-0.983
1	4	I_DA-69:DT69_J	0.302	-0.097	-0.767	-5.047	-20.438	5.523
1	5	I_DA-68:DT68_J	1.157	0.186	0.043	2.525	-15.122	5.923
1	7	I_DA-66:DT66_J	0.228	0.132	0.098	16.031	-11.978	-1.892
1	11	I_DA-62:DT62_J	-0.579	-0.357	0.773	15.699	-9.946	-3.289
1	16	I_DA-56:DT56_J	0.801	0.048	0.35	8.598	-23.033	3.671
1	18	I_DA-54:DT54_J	0.924	0.249	-0.67	-11.591	-15.223	-9.499
1	20	I_DA-52:DT52_J	-0.912	-0.077	-0.034	-6.9	-10.227	1.714
1	22	I_DA-49:DT49_J	-0.583	0.307	-0.154	-2.203	-6.744	2.114
1	25	I_DA-46:DT46_J	0.342	-0.084	0.618	23.991	-20.084	-9.112
1	26	I_DA-45:DT45_J	1.022	-0.191	0.458	25.591	-19.064	-3.19
1	27	I_DA-44:DT44_J	0.296	0.069	0.205	12.183	-32.782	5.677
1	28	I_DA-43:DT43_J	0.618	0.256	0.396	15.166	-20.349	8.42
1	33	I_DA-38:DT38_J	-0.981	-0.005	0.185	-12.314	-4.724	-9.488
1	39	I_DA-32:DT32_J	-0.891	0.129	-0.347	-5.521	-21.058	17.873
1	40	I_DA-31:DT31_J	-0.701	0.077	-0.97	-7.641	-20.527	10.846
1	41	I_DA-30:DT30_J	-1.214	-0.179	-0.223	-3.973	-6.303	2.634
1	49	I_DA-22:DT22_J	-0.091	0.229	0.882	12.69	8.458	0.799
1	52	I_DA-19:DT19_J	-0.845	-0.534	-0.456	8.657	-19.351	-0.657
1	53	I_DA-18:DT18_J	0.777	-0.007	0.068	0.579	-30.408	2.95
1	54	I_DA-17:DT17_J	0.219	0.349	0.347	-10.345	-18.221	4.1
1	55	I_DA-16:DT16_J	-0.071	-0.327	0.856	1.166	-14.051	-11.371
1	59	I_DA-12:DT12_J	-0.699	-0.269	0.166	-2.456	-3.463	-0.88
1	65	I_DA-6:DT6_J	0.525	-0.081	0.02	-2.088	-21.745	-0.08
1	70	I_DA-1:DT1_J	0.021	-0.091	0.177	1.841	-9.23	-2.257
1	71	I_DA0:DT0_J	0.762	-0.2	0.139	1.07	-8.987	1.074
1	74	I_DA3:DT-3_J	-0.234	0.123	0.277	4.503	-23.731	-4.038
1	79	I_DA8:DT-8_J	0.048	-0.085	0.38	7.371	-11.938	4.494
1	80	I_DA9:DT-9_J	0.202	-0.155	-0.054	7.656	-17.86	-0.491
1	82	I_DA11:DT-11_J	0.208	-0.191	-0.127	-5.272	-16.628	10.099
1	92	I_DA21:DT-21_J	-0.774	-0.303	-0.743	-12.481	-13.403	-12.778
1	96	I_DA25:DT-25_J	1.756	0.052	0.843	9.01	-28.704	-5.171
1	99	I_DA28:DT-28_J	-0.158	0.24	0.193	-5.507	-18.578	9.719
1	105	I_DA35:DT-35_J	0.104	-0.238	-0.391	-16.281	-14.359	-5.392
1	106	I_DA36:DT-36_J	-0.027	-0.135	-0.197	-3.368	-20.243	-0.123
1	107	I_DA37:DT-37_J	-0.067	-0.427	-0.241	-1.121	-10.64	3.806
1	109	I_DA39:DT-39_J	-0.567	-0.463	-0.165	2.471	-12.732	-4.97
1	111	I_DA41:DT-41_J	0.592	-0.286	-0.446	-16.613	-24.178	-5.223
1	119	I_DA50:DT-50_J	0.175	0.186	-0.004	15.629	-39.119	5.672
1	121	I_DA53:DT-53_J	0.378	0.064	0.29	0.846	-3.095	0.74
1	127	I_DA59:DT-59_J	0.167	0.3	0.798	18.837	-16.295	6.858
1	133	I_DA65:DT-65_J	-0.355	-0.004	0.41	-5.302	-3.919	-3.051
1	135	I_DA67:DT-67_J	-0.342	-0.209	-0.106	-14.439	-7.988	-1.95
1	139	I_DA71:DT-71_J	1.133	-0.236	-0.413	-7.319	6.918	-0.045
1	3	I_DC-70:DG70_J	-1.025	0.11	-0.243	1.1	-21.336	0.304
1	9	I_DC-64:DG64_J	-1.133	0.291	-0.084	2.332	-16.692	10.269
1	10	I_DC-63:DG63_J	-1.868	0.312	-0.461	-0.985	-8.096	7.048
1	12	I_DC-61:DG61_J	-0.927	0.006	0.154	15.106	-7.891	-2.975
1	13	I_DC-60:DG60_J	-0.805	0.389	-0.115	-0.694	-16.422	14.662
1	15	I_DC-57:DG57_J	0.685	0.204	0.153	6.711	-10.057	9.255
1	21	I_DC-51:DG51_J	-0.066	-0.106	0.404	4.707	-12.64	-2.977
1	23	I_DC-48:DG48_J	-0.046	-0.077	0.548	-2.531	-2.69	-1.238
1	24	I_DC-47:DG47_J	0.138	0.35	-0.295	21.149	-7.863	7.867
1	42	I_DC-29:DG29_J	-1.065	0.365	0.227	-7.388	-9.498	3.549
1	45	I_DC-26:DG26_J	0.77	0.097	-0.458	4.435	-11.659	10.88
1	47	I_DC-24:DG24_J	-0.693	-0.091	0.473	-7.7	-8.452	-0.417
1	48	I_DC-23:DG23_J	0.328	0.469	0.011	-8.109	-18.668	3.534
1	51	I_DC-20:DG20_J	0.053	-0.034	0.038	14.164	-11.0	2.72
1	58	I_DC-13:DG13_J	-0.845	0.807	0.549	-12.911	-16.849	16.695
1	64	I_DC-7:DG7_J	0.978	0.079	-0.894	16.141	-12.019	9.931
1	67	I_DC-4:DG4_J	-0.839	-0.108	0.419	-5.059	-13.95	-2.294
1	73	I_DC2:DG-2_J	0.162	-0.193	0.249	-4.178	-4.7	-1.334
1	76	I_DC5:DG-5_J	0.622	-0.445	-0.223	5.377	-8.294	-3.624
1	81	I_DC10:DG-10_J	0.014	-0.108	-0.953	18.904	-1.024	1.158
1	85	I_DC14:DG-14_J	0.719	-0.153	0.295	-3.819	5.555	2.954
1	86	I_DC15:DG-15_J	-0.517	0.137	-0.365	1.4	-1.581	3.739
1	98	I_DC27:DG-27_J	0.959	0.235	0.353	13.979	-28.084	6.394
1	103	I_DC33:DG-33_J	0.092	0.338	0.671	-29.913	2.237	-1.511
1	104	I_DC34:DG-34_J	-0.059	-0.198	1.108	-13.54	-4.626	-8.649
1	110	I_DC40:DG-40_J	-0.396	0.132	-0.514	9.29	-26.833	2.812
1	112	I_DC42:DG-42_J	-0.437	-0.131	0.13	-0.375	-10.959	0.651
1	123	I_DC55:DG-55_J	-0.487	-0.052	1.107	-19.616	-17.277	3.998
1	126	I_DC58:DG-58_J	0.241	-0.043	-0.104	4.754	-4.573	0.722
1	14	I_DG-58:DC58_J	-0.279	0.476	-0.04	-16.462	-6.774	7.841
1	17	I_DG-55:DC55_J	1.218	0.54	0.285	5.782	-19.43	6.265
1	29	I_DG-42:DC42_J	-0.286	0.842	0.157	-3.457	-8.39	7.848
1	31	I_DG-40:DC40_J	-1.001	-0.039	-0.276	-2.047	-9.955	7.0
1	37	I_DG-34:DC34_J	-0.191	-0.312	1.023	-7.06	-11.513	-2.951
1	38	I_DG-33:DC33_J	-0.137	-0.151	1.441	14.471	8.027	-0.081
1	44	I_DG-27:DC27_J	-0.213	-0.199	-0.402	-21.033	-24.053	0.636
1	56	I_DG-15:DC15_J	0.813	0.269	0.289	6.632	-1.809	5.155
1	57	I_DG-14:DC14_J	0.476	0.187	-0.258	-13.185	-37.678	2.573
1	61	I_DG-10:DC10_J	-0.692	-0.219	-0.164	-14.42	0.3	5.926
1	66	I_DG-5:DC5_J	0.336	-0.014	0.196	2.746	-17.66	-2.572
1	69	I_DG-2:DC2_J	-0.612	0.3	0.368	9.234	-1.464	8.372
1	75	I_DG4:DC-4_J	-0.191	-0.163	-0.038	-0.456	-23.923	-2.393
1	78	I_DG7:DC-7_J	-0.084	-0.184	-0.928	-19.33	-3.848	-1.86
1	84	I_DG13:DC-13_J	-0.021	0.4	-0.023	2.523	4.039	8.851
1	91	I_DG20:DC-20_J	-0.406	0.071	0.176	8.369	-3.128	2.947
1	94	I_DG23:DC-23_J	-0.897	0.323	-0.725	6.091	-27.297	-5.181
1	95	I_DG24:DC-24_J	0.209	0.054	-0.618	-5.631	-3.587	9.056
1	97	I_DG26:DC-26_J	-0.521	-0.014	1.287	30.32	0.983	1.606
1	100	I_DG29:DC-29_J	0.002	0.116	1.199	3.507	-4.037	6.566
1	117	I_DG47:DC-47_J	1.073	0.808	0.052	-18.51	-23.97	10.41
1	118	I_DG48:DC-48_J	-0.785	0.087	0.139	1.026	-12.123	3.58
1	120	I_DG51:DC-51_J	-0.493	0.688	0.571	4.635	-18.7	9.883
1	125	I_DG57:DC-57_J	0.001	-0.19	0.84	-6.863	-7.65	-0.063
1	128	I_DG60:DC-60_J	1.259	0.441	0.449	12.458	-21.175	16.119
1	129	I_DG61:DC-61_J	0.29	-0.331	-0.451	-9.755	-19.308	-0.522
1	131	I_DG63:DC-63_J	-0.491	-0.335	-0.328	1.663	-7.092	-2.655
1	132	I_DG64:DC-64_J	0.458	0.231	-0.018	7.142	-10.02	7.941
1	138	I_DG70:DC-70_J	-0.009	-0.25	-0.86	-7.283	-10.987	2.336
1	2	I_DT-71:DA71_J	-0.155	0.042	-0.071	-2.752	-12.982	-3.37
1	6	I_DT-67:DA67_J	-0.392	-0.1	-0.12	20.795	-3.693	-4.706
1	8	I_DT-65:DA65_J	0.044	0.274	0.081	7.59	-8.13	-2.716
1	19	I_DT-53:DA53_J	0.309	0.02	0.279	5.133	-9.527	0.372
1	30	I_DT-41:DA41_J	0.573	-0.15	-0.567	3.928	-17.042	1.19
1	32	I_DT-39:DA39_J	0.462	0.137	-1.269	11.377	-15.721	-0.027
1	34	I_DT-37:DA37_J	-0.146	-0.405	1.441	-8.321	-9.048	1.532
1	35	I_DT-36:DA36_J	-0.051	-0.378	1.25	-17.018	-22.041	-4.367
1	36	I_DT-35:DA35_J	0.065	-0.152	1.264	-14.13	-26.694	3.131
1	43	I_DT-28:DA28_J	-0.469	-0.011	0.499	-6.421	-5.1	3.041
1	46	I_DT-25:DA25_J	-0.461	-0.01	0.307	-0.49	-40.286	0.908
1	50	I_DT-21:DA21_J	-0.193	-0.013	-0.168	16.317	-14.742	-5.664
1	60	I_DT-11:DA11_J	0.116	0.022	0.047	24.73	-0.933	6.152
1	62	I_DT-9:DA9_J	0.405	-0.205	0.218	-11.152	-21.293	2.916
1	63	I_DT-8:DA8_J	0.125	-0.336	-0.065	-1.195	-12.868	1.711
1	68	I_DT-3:DA3_J	0.202	-0.167	-0.062	-5.953	-14.182	-9.28
1	72	I_DT1:DA-1_J	0.182	-0.021	-0.237	-0.932	-17.112	2.587
1	77	I_DT6:DA-6_J	-0.402	-0.238	0.106	3.952	-32.032	-6.527
1	83	I_DT12:DA-12_J	0.037	0.043	-0.508	-1.788	-7.22	10.635
1	87	I_DT16:DA-16_J	-0.772	-0.034	0.411	-7.663	8.223	3.097
1	88	I_DT17:DA-17_J	-0.822	-0.082	-0.056	-2.335	-16.152	3.813
1	89	I_DT18:DA-18_J	-1.018	0.237	-0.61	1.519	-26.161	11.878
1	90	I_DT19:DA-19_J	1.514	-0.394	-0.292	-3.126	-11.467	-5.091
1	93	I_DT22:DA-22_J	0.57	0.238	0.129	-4.081	-13.029	2.123
1	101	I_DT31:DA-31_J	0.425	0.37	-0.125	-8.02	-17.917	8.722
1	102	I_DT32:DA-32_J	0.335	0.327	-0.864	-21.326	-27.369	0.318
1	108	I_DT38:DA-38_J	-0.088	-0.004	0.074	12.178	-8.529	-9.067
1	113	I_DT43:DA-43_J	-0.308	-0.112	0.198	-10.742	-13.205	-6.258
1	114	I_DT44:DA-44_J	0.507	0.032	0.42	-11.885	-9.551	-3.025
1	115	I_DT45:DA-45_J	0.795	-0.143	0.743	-21.348	-23.287	6.826
1	116	I_DT46:DA-46_J	0.195	0.449	-0.134	-22.592	-23.832	-2.316
1	122	I_DT54:DA-54_J	-0.409	0.094	-0.076	6.726	-14.783	7.124
1	124	I_DT56:DA-56_J	-0.233	-0.344	0.93	-10.382	-6.798	-6.025
1	130	I_DT62:DA-62_J	0.362	-0.396	-0.066	-3.044	-10.53	-2.984
1	134	I_DT66:DA-66_J	0.212	-0.203	0.39	0.345	-11.153	0.615
1	136	I_DT68:DA-68_J	-0.427	-0.321	0.415	-6.612	-16.382	-4.221
1	137	I_DT69:DA-69_J	0.341	-0.278	-0.234	-2.226	-7.767	-8.648
1	140	I_DT72:DA-72_J	-0.524	-0.428	-0.325	7.973	-0.404	-5.445

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.