A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 28-Sep-2022 number of released structures: 12311
Search for released structures

NDB ID: NA1063  PDB ID: 3REI 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11I_DA-72:DT72_J-0.754-0.3690.054-21.4094.632-0.983
14I_DA-69:DT69_J0.302-0.097-0.767-5.047-20.4385.523
15I_DA-68:DT68_J1.1570.1860.0432.525-15.1225.923
17I_DA-66:DT66_J0.2280.1320.09816.031-11.978-1.892
111I_DA-62:DT62_J-0.579-0.3570.77315.699-9.946-3.289
116I_DA-56:DT56_J0.8010.0480.358.598-23.0333.671
118I_DA-54:DT54_J0.9240.249-0.67-11.591-15.223-9.499
120I_DA-52:DT52_J-0.912-0.077-0.034-6.9-10.2271.714
122I_DA-49:DT49_J-0.5830.307-0.154-2.203-6.7442.114
125I_DA-46:DT46_J0.342-0.0840.61823.991-20.084-9.112
126I_DA-45:DT45_J1.022-0.1910.45825.591-19.064-3.19
127I_DA-44:DT44_J0.2960.0690.20512.183-32.7825.677
128I_DA-43:DT43_J0.6180.2560.39615.166-20.3498.42
133I_DA-38:DT38_J-0.981-0.0050.185-12.314-4.724-9.488
139I_DA-32:DT32_J-0.8910.129-0.347-5.521-21.05817.873
140I_DA-31:DT31_J-0.7010.077-0.97-7.641-20.52710.846
141I_DA-30:DT30_J-1.214-0.179-0.223-3.973-6.3032.634
149I_DA-22:DT22_J-0.0910.2290.88212.698.4580.799
152I_DA-19:DT19_J-0.845-0.534-0.4568.657-19.351-0.657
153I_DA-18:DT18_J0.777-0.0070.0680.579-30.4082.95
154I_DA-17:DT17_J0.2190.3490.347-10.345-18.2214.1
155I_DA-16:DT16_J-0.071-0.3270.8561.166-14.051-11.371
159I_DA-12:DT12_J-0.699-0.2690.166-2.456-3.463-0.88
165I_DA-6:DT6_J0.525-0.0810.02-2.088-21.745-0.08
170I_DA-1:DT1_J0.021-0.0910.1771.841-9.23-2.257
171I_DA0:DT0_J0.762-0.20.1391.07-8.9871.074
174I_DA3:DT-3_J-0.2340.1230.2774.503-23.731-4.038
179I_DA8:DT-8_J0.048-0.0850.387.371-11.9384.494
180I_DA9:DT-9_J0.202-0.155-0.0547.656-17.86-0.491
182I_DA11:DT-11_J0.208-0.191-0.127-5.272-16.62810.099
192I_DA21:DT-21_J-0.774-0.303-0.743-12.481-13.403-12.778
196I_DA25:DT-25_J1.7560.0520.8439.01-28.704-5.171
199I_DA28:DT-28_J-0.1580.240.193-5.507-18.5789.719
1105I_DA35:DT-35_J0.104-0.238-0.391-16.281-14.359-5.392
1106I_DA36:DT-36_J-0.027-0.135-0.197-3.368-20.243-0.123
1107I_DA37:DT-37_J-0.067-0.427-0.241-1.121-10.643.806
1109I_DA39:DT-39_J-0.567-0.463-0.1652.471-12.732-4.97
1111I_DA41:DT-41_J0.592-0.286-0.446-16.613-24.178-5.223
1119I_DA50:DT-50_J0.1750.186-0.00415.629-39.1195.672
1121I_DA53:DT-53_J0.3780.0640.290.846-3.0950.74
1127I_DA59:DT-59_J0.1670.30.79818.837-16.2956.858
1133I_DA65:DT-65_J-0.355-0.0040.41-5.302-3.919-3.051
1135I_DA67:DT-67_J-0.342-0.209-0.106-14.439-7.988-1.95
1139I_DA71:DT-71_J1.133-0.236-0.413-7.3196.918-0.045
13I_DC-70:DG70_J-1.0250.11-0.2431.1-21.3360.304
19I_DC-64:DG64_J-1.1330.291-0.0842.332-16.69210.269
110I_DC-63:DG63_J-1.8680.312-0.461-0.985-8.0967.048
112I_DC-61:DG61_J-0.9270.0060.15415.106-7.891-2.975
113I_DC-60:DG60_J-0.8050.389-0.115-0.694-16.42214.662
115I_DC-57:DG57_J0.6850.2040.1536.711-10.0579.255
121I_DC-51:DG51_J-0.066-0.1060.4044.707-12.64-2.977
123I_DC-48:DG48_J-0.046-0.0770.548-2.531-2.69-1.238
124I_DC-47:DG47_J0.1380.35-0.29521.149-7.8637.867
142I_DC-29:DG29_J-1.0650.3650.227-7.388-9.4983.549
145I_DC-26:DG26_J0.770.097-0.4584.435-11.65910.88
147I_DC-24:DG24_J-0.693-0.0910.473-7.7-8.452-0.417
148I_DC-23:DG23_J0.3280.4690.011-8.109-18.6683.534
151I_DC-20:DG20_J0.053-0.0340.03814.164-11.02.72
158I_DC-13:DG13_J-0.8450.8070.549-12.911-16.84916.695
164I_DC-7:DG7_J0.9780.079-0.89416.141-12.0199.931
167I_DC-4:DG4_J-0.839-0.1080.419-5.059-13.95-2.294
173I_DC2:DG-2_J0.162-0.1930.249-4.178-4.7-1.334
176I_DC5:DG-5_J0.622-0.445-0.2235.377-8.294-3.624
181I_DC10:DG-10_J0.014-0.108-0.95318.904-1.0241.158
185I_DC14:DG-14_J0.719-0.1530.295-3.8195.5552.954
186I_DC15:DG-15_J-0.5170.137-0.3651.4-1.5813.739
198I_DC27:DG-27_J0.9590.2350.35313.979-28.0846.394
1103I_DC33:DG-33_J0.0920.3380.671-29.9132.237-1.511
1104I_DC34:DG-34_J-0.059-0.1981.108-13.54-4.626-8.649
1110I_DC40:DG-40_J-0.3960.132-0.5149.29-26.8332.812
1112I_DC42:DG-42_J-0.437-0.1310.13-0.375-10.9590.651
1123I_DC55:DG-55_J-0.487-0.0521.107-19.616-17.2773.998
1126I_DC58:DG-58_J0.241-0.043-0.1044.754-4.5730.722
114I_DG-58:DC58_J-0.2790.476-0.04-16.462-6.7747.841
117I_DG-55:DC55_J1.2180.540.2855.782-19.436.265
129I_DG-42:DC42_J-0.2860.8420.157-3.457-8.397.848
131I_DG-40:DC40_J-1.001-0.039-0.276-2.047-9.9557.0
137I_DG-34:DC34_J-0.191-0.3121.023-7.06-11.513-2.951
138I_DG-33:DC33_J-0.137-0.1511.44114.4718.027-0.081
144I_DG-27:DC27_J-0.213-0.199-0.402-21.033-24.0530.636
156I_DG-15:DC15_J0.8130.2690.2896.632-1.8095.155
157I_DG-14:DC14_J0.4760.187-0.258-13.185-37.6782.573
161I_DG-10:DC10_J-0.692-0.219-0.164-14.420.35.926
166I_DG-5:DC5_J0.336-0.0140.1962.746-17.66-2.572
169I_DG-2:DC2_J-0.6120.30.3689.234-1.4648.372
175I_DG4:DC-4_J-0.191-0.163-0.038-0.456-23.923-2.393
178I_DG7:DC-7_J-0.084-0.184-0.928-19.33-3.848-1.86
184I_DG13:DC-13_J-0.0210.4-0.0232.5234.0398.851
191I_DG20:DC-20_J-0.4060.0710.1768.369-3.1282.947
194I_DG23:DC-23_J-0.8970.323-0.7256.091-27.297-5.181
195I_DG24:DC-24_J0.2090.054-0.618-5.631-3.5879.056
197I_DG26:DC-26_J-0.521-0.0141.28730.320.9831.606
1100I_DG29:DC-29_J0.0020.1161.1993.507-4.0376.566
1117I_DG47:DC-47_J1.0730.8080.052-18.51-23.9710.41
1118I_DG48:DC-48_J-0.7850.0870.1391.026-12.1233.58
1120I_DG51:DC-51_J-0.4930.6880.5714.635-18.79.883
1125I_DG57:DC-57_J0.001-0.190.84-6.863-7.65-0.063
1128I_DG60:DC-60_J1.2590.4410.44912.458-21.17516.119
1129I_DG61:DC-61_J0.29-0.331-0.451-9.755-19.308-0.522
1131I_DG63:DC-63_J-0.491-0.335-0.3281.663-7.092-2.655
1132I_DG64:DC-64_J0.4580.231-0.0187.142-10.027.941
1138I_DG70:DC-70_J-0.009-0.25-0.86-7.283-10.9872.336
12I_DT-71:DA71_J-0.1550.042-0.071-2.752-12.982-3.37
16I_DT-67:DA67_J-0.392-0.1-0.1220.795-3.693-4.706
18I_DT-65:DA65_J0.0440.2740.0817.59-8.13-2.716
119I_DT-53:DA53_J0.3090.020.2795.133-9.5270.372
130I_DT-41:DA41_J0.573-0.15-0.5673.928-17.0421.19
132I_DT-39:DA39_J0.4620.137-1.26911.377-15.721-0.027
134I_DT-37:DA37_J-0.146-0.4051.441-8.321-9.0481.532
135I_DT-36:DA36_J-0.051-0.3781.25-17.018-22.041-4.367
136I_DT-35:DA35_J0.065-0.1521.264-14.13-26.6943.131
143I_DT-28:DA28_J-0.469-0.0110.499-6.421-5.13.041
146I_DT-25:DA25_J-0.461-0.010.307-0.49-40.2860.908
150I_DT-21:DA21_J-0.193-0.013-0.16816.317-14.742-5.664
160I_DT-11:DA11_J0.1160.0220.04724.73-0.9336.152
162I_DT-9:DA9_J0.405-0.2050.218-11.152-21.2932.916
163I_DT-8:DA8_J0.125-0.336-0.065-1.195-12.8681.711
168I_DT-3:DA3_J0.202-0.167-0.062-5.953-14.182-9.28
172I_DT1:DA-1_J0.182-0.021-0.237-0.932-17.1122.587
177I_DT6:DA-6_J-0.402-0.2380.1063.952-32.032-6.527
183I_DT12:DA-12_J0.0370.043-0.508-1.788-7.2210.635
187I_DT16:DA-16_J-0.772-0.0340.411-7.6638.2233.097
188I_DT17:DA-17_J-0.822-0.082-0.056-2.335-16.1523.813
189I_DT18:DA-18_J-1.0180.237-0.611.519-26.16111.878
190I_DT19:DA-19_J1.514-0.394-0.292-3.126-11.467-5.091
193I_DT22:DA-22_J0.570.2380.129-4.081-13.0292.123
1101I_DT31:DA-31_J0.4250.37-0.125-8.02-17.9178.722
1102I_DT32:DA-32_J0.3350.327-0.864-21.326-27.3690.318
1108I_DT38:DA-38_J-0.088-0.0040.07412.178-8.529-9.067
1113I_DT43:DA-43_J-0.308-0.1120.198-10.742-13.205-6.258
1114I_DT44:DA-44_J0.5070.0320.42-11.885-9.551-3.025
1115I_DT45:DA-45_J0.795-0.1430.743-21.348-23.2876.826
1116I_DT46:DA-46_J0.1950.449-0.134-22.592-23.832-2.316
1122I_DT54:DA-54_J-0.4090.094-0.0766.726-14.7837.124
1124I_DT56:DA-56_J-0.233-0.3440.93-10.382-6.798-6.025
1130I_DT62:DA-62_J0.362-0.396-0.066-3.044-10.53-2.984
1134I_DT66:DA-66_J0.212-0.2030.390.345-11.1530.615
1136I_DT68:DA-68_J-0.427-0.3210.415-6.612-16.382-4.221
1137I_DT69:DA-69_J0.341-0.278-0.234-2.226-7.767-8.648
1140I_DT72:DA-72_J-0.524-0.428-0.3257.973-0.404-5.445

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.