3S3M: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 23-Nov-2022 number of released structures: 12471

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NDB ID: NA1128 PDB ID: 3S3M

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	4	C_DA7:DT13_D	0.033	-0.162	-0.114	-0.581	-16.865	-3.972
1	8	C_DA11:DT9_D	0.219	-0.15	0.157	6.42	-15.929	2.033
1	9	C_DA12:DT8_D	0.163	-0.118	0.019	-1.314	-15.189	1.826
1	16	C_DA19:DT1_D	-0.513	-0.381	-0.558	-4.252	-5.735	5.027
1	3	C_DC6:DG14_D	-0.002	-0.018	-0.225	2.275	1.72	0.506
1	13	C_DC16:DG4_D	0.152	-0.051	-0.037	-6.648	-11.262	0.198
1	15	C_DC18:DG2_D	0.057	-0.366	0.042	4.622	-1.093	-1.219
1	1	C_DG4:DC16_D	-0.19	-0.045	-0.616	-26.712	-18.033	0.033
1	6	C_DG9:DC11_D	-0.055	-0.127	0.076	6.22	4.31	-4.268
1	7	C_DG10:DC10_D	-0.275	-0.16	0.209	15.613	-9.706	-0.637
1	14	C_DG17:DC3_D	-0.066	-0.361	-0.082	-3.169	-11.094	-1.223
1	2	C_DT5:DA15_D	-0.146	-0.216	-0.159	-12.669	-5.691	3.308
1	5	C_DT8:DA12_D	-0.071	-0.094	0.038	-2.99	-14.773	8.179
1	10	C_DT13:DA7_D	0.05	-0.198	-0.054	0.767	-15.601	2.93
1	11	C_DT14:DA6_D	-0.094	-0.324	-0.178	-3.344	-16.405	1.292
1	12	C_DT15:DA5_D	-0.194	-0.185	-0.252	-4.675	-13.862	-1.762

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.