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As of 22-Jun-2022 number of released structures: 12128
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NDB ID:
NA1128
PDB ID:
3S3M
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
4
C_DA7:DT13_D
0.033
-0.162
-0.114
-0.581
-16.865
-3.972
1
8
C_DA11:DT9_D
0.219
-0.15
0.157
6.42
-15.929
2.033
1
9
C_DA12:DT8_D
0.163
-0.118
0.019
-1.314
-15.189
1.826
1
16
C_DA19:DT1_D
-0.513
-0.381
-0.558
-4.252
-5.735
5.027
1
3
C_DC6:DG14_D
-0.002
-0.018
-0.225
2.275
1.72
0.506
1
13
C_DC16:DG4_D
0.152
-0.051
-0.037
-6.648
-11.262
0.198
1
15
C_DC18:DG2_D
0.057
-0.366
0.042
4.622
-1.093
-1.219
1
1
C_DG4:DC16_D
-0.19
-0.045
-0.616
-26.712
-18.033
0.033
1
6
C_DG9:DC11_D
-0.055
-0.127
0.076
6.22
4.31
-4.268
1
7
C_DG10:DC10_D
-0.275
-0.16
0.209
15.613
-9.706
-0.637
1
14
C_DG17:DC3_D
-0.066
-0.361
-0.082
-3.169
-11.094
-1.223
1
2
C_DT5:DA15_D
-0.146
-0.216
-0.159
-12.669
-5.691
3.308
1
5
C_DT8:DA12_D
-0.071
-0.094
0.038
-2.99
-14.773
8.179
1
10
C_DT13:DA7_D
0.05
-0.198
-0.054
0.767
-15.601
2.93
1
11
C_DT14:DA6_D
-0.094
-0.324
-0.178
-3.344
-16.405
1.292
1
12
C_DT15:DA5_D
-0.194
-0.185
-0.252
-4.675
-13.862
-1.762
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.