A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 23-Nov-2022 number of released structures: 12471
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NDB ID: NA1128  PDB ID: 3S3M 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14C_DA7:DT13_D0.033-0.162-0.114-0.581-16.865-3.972
18C_DA11:DT9_D0.219-0.150.1576.42-15.9292.033
19C_DA12:DT8_D0.163-0.1180.019-1.314-15.1891.826
116C_DA19:DT1_D-0.513-0.381-0.558-4.252-5.7355.027
13C_DC6:DG14_D-0.002-0.018-0.2252.2751.720.506
113C_DC16:DG4_D0.152-0.051-0.037-6.648-11.2620.198
115C_DC18:DG2_D0.057-0.3660.0424.622-1.093-1.219
11C_DG4:DC16_D-0.19-0.045-0.616-26.712-18.0330.033
16C_DG9:DC11_D-0.055-0.1270.0766.224.31-4.268
17C_DG10:DC10_D-0.275-0.160.20915.613-9.706-0.637
114C_DG17:DC3_D-0.066-0.361-0.082-3.169-11.094-1.223
12C_DT5:DA15_D-0.146-0.216-0.159-12.669-5.6913.308
15C_DT8:DA12_D-0.071-0.0940.038-2.99-14.7738.179
110C_DT13:DA7_D0.05-0.198-0.0540.767-15.6012.93
111C_DT14:DA6_D-0.094-0.324-0.178-3.344-16.4051.292
112C_DT15:DA5_D-0.194-0.185-0.252-4.675-13.862-1.762

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.