3S3O: Base Pair Morphology Parameters

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As of 18-May-2022 number of released structures: 12082

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NDB ID: NA1130 PDB ID: 3S3O

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	4	C_DA7:DT13_D	0.056	-0.169	0.035	-0.295	-12.638	-0.707
1	8	C_DA11:DT9_D	0.138	-0.208	-0.037	3.993	-13.997	1.656
1	9	C_DA12:DT8_D	0.094	-0.134	0.132	-1.074	-11.625	0.458
1	16	C_DA19:DT1_D	-0.445	-0.392	-0.376	-4.137	-5.989	5.191
1	3	C_DC6:DG14_D	-0.017	-0.099	-0.048	0.635	2.884	-0.599
1	13	C_DC16:DG4_D	0.239	-0.035	-0.024	-7.618	-11.559	0.281
1	15	C_DC18:DG2_D	-0.146	-0.33	-0.031	3.132	-1.092	-0.824
1	1	C_DG4:DC16_D	-0.225	-0.02	-0.531	-27.497	-19.376	-1.204
1	6	C_DG9:DC11_D	0.036	-0.225	-0.063	4.165	4.967	-4.127
1	7	C_DG10:DC10_D	-0.278	-0.174	0.041	12.994	-9.445	1.159
1	14	C_DG17:DC3_D	-0.223	-0.397	0.048	-3.539	-11.907	0.136
1	2	C_DT5:DA15_D	-0.264	-0.108	-0.045	-11.29	-7.209	5.285
1	5	C_DT8:DA12_D	-0.094	-0.168	0.013	-3.477	-17.003	6.316
1	10	C_DT13:DA7_D	0.049	-0.253	-0.143	0.026	-12.9	0.899
1	11	C_DT14:DA6_D	-0.058	-0.323	-0.165	-3.956	-14.079	1.715
1	12	C_DT15:DA5_D	-0.514	-0.317	-0.325	-3.074	-14.409	-4.305

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.