A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: NA1130  PDB ID: 3S3O 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14C_DA7:DT13_D0.056-0.1690.035-0.295-12.638-0.707
18C_DA11:DT9_D0.138-0.208-0.0373.993-13.9971.656
19C_DA12:DT8_D0.094-0.1340.132-1.074-11.6250.458
116C_DA19:DT1_D-0.445-0.392-0.376-4.137-5.9895.191
13C_DC6:DG14_D-0.017-0.099-0.0480.6352.884-0.599
113C_DC16:DG4_D0.239-0.035-0.024-7.618-11.5590.281
115C_DC18:DG2_D-0.146-0.33-0.0313.132-1.092-0.824
11C_DG4:DC16_D-0.225-0.02-0.531-27.497-19.376-1.204
16C_DG9:DC11_D0.036-0.225-0.0634.1654.967-4.127
17C_DG10:DC10_D-0.278-0.1740.04112.994-9.4451.159
114C_DG17:DC3_D-0.223-0.3970.048-3.539-11.9070.136
12C_DT5:DA15_D-0.264-0.108-0.045-11.29-7.2095.285
15C_DT8:DA12_D-0.094-0.1680.013-3.477-17.0036.316
110C_DT13:DA7_D0.049-0.253-0.1430.026-12.90.899
111C_DT14:DA6_D-0.058-0.323-0.165-3.956-14.0791.715
112C_DT15:DA5_D-0.514-0.317-0.325-3.074-14.409-4.305

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.