3S3O: Base Pair Morphology Step Parameters

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As of 18-May-2022 number of released structures: 12082

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NDB ID: NA1130 PDB ID: 3S3O

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	4	CC_DA7DT8:DA12DT13_DD	0.498	-0.34	3.333	0.467	2.858	29.382	-1.285	-0.876	3.293	5.618	-0.919	29.522
1	8	CC_DA11DA12:DT8DT9_DD	-0.241	-0.068	3.227	-3.011	-2.163	38.983	0.155	0.002	3.235	-3.232	4.499	39.152
1	9	CC_DA12DT13:DA7DT8_DD	-0.056	-0.492	3.152	2.246	-2.535	31.792	-0.45	0.495	3.169	-4.611	-4.086	31.967
1	3	CC_DC6DA7:DT13DG14_DD	-1.351	0.999	3.323	-3.42	6.804	39.35	0.634	1.558	3.541	9.99	5.021	40.051
1	13	CC_DC16DG17:DC3DG4_DD	0.019	0.655	3.295	-2.994	12.328	32.68	-0.854	-0.503	3.307	20.951	5.088	34.993
1	15	CC_DC18DA19:DT1DG2_DD	0.706	-0.289	3.554	3.813	11.058	29.227	-2.786	-0.526	3.295	20.89	-7.204	31.433
1	1	CC_DG4DT5:DA15DC16_DD	0.908	0.09	2.898	-3.352	4.094	34.15	-0.402	-1.982	2.791	6.92	5.666	34.546
1	6	CC_DG9DG10:DC10DC11_DD	-0.673	0.614	3.102	-1.817	6.781	30.073	-0.131	0.921	3.195	12.849	3.444	30.863
1	7	CC_DG10DA11:DT9DC10_DD	-0.062	-0.17	3.455	1.421	2.028	40.975	-0.474	0.251	3.439	2.894	-2.027	41.047
1	14	CC_DG17DC18:DG2DC3_DD	0.801	-0.218	3.081	0.021	1.393	29.607	-0.703	-1.561	3.068	2.724	-0.041	29.64
1	2	CC_DT5DC6:DG14DA15_DD	0.111	0.589	3.219	-0.625	8.286	29.135	-0.563	-0.34	3.257	16.064	1.211	30.272
1	5	CC_DT8DG9:DC11DA12_DD	0.671	1.829	3.246	4.193	5.738	38.69	2.008	-0.477	3.522	8.572	-6.265	39.313
1	10	CC_DT13DT14:DA6DA7_DD	0.075	-0.133	3.277	0.677	-2.801	38.025	0.152	-0.03	3.279	-4.291	-1.037	38.13
1	11	CC_DT14DT15:DA5DA6_DD	-0.05	0.021	3.176	2.276	-2.882	37.515	0.395	0.364	3.158	-4.467	-3.529	37.688
1	12	CC_DT15DC16:DG4DA5_DD	-0.055	-0.06	3.372	-2.74	0.888	38.904	-0.201	-0.259	3.365	1.331	4.107	39.006

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.