A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
Search for released structures

NDB ID: NA1130  PDB ID: 3S3O 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
14CC_DA7DT8:DA12DT13_DD0.498-0.343.3330.4672.85829.382-1.285-0.8763.2935.618-0.91929.522
18CC_DA11DA12:DT8DT9_DD-0.241-0.0683.227-3.011-2.16338.9830.1550.0023.235-3.2324.49939.152
19CC_DA12DT13:DA7DT8_DD-0.056-0.4923.1522.246-2.53531.792-0.450.4953.169-4.611-4.08631.967
13CC_DC6DA7:DT13DG14_DD-1.3510.9993.323-3.426.80439.350.6341.5583.5419.995.02140.051
113CC_DC16DG17:DC3DG4_DD0.0190.6553.295-2.99412.32832.68-0.854-0.5033.30720.9515.08834.993
115CC_DC18DA19:DT1DG2_DD0.706-0.2893.5543.81311.05829.227-2.786-0.5263.29520.89-7.20431.433
11CC_DG4DT5:DA15DC16_DD0.9080.092.898-3.3524.09434.15-0.402-1.9822.7916.925.66634.546
16CC_DG9DG10:DC10DC11_DD-0.6730.6143.102-1.8176.78130.073-0.1310.9213.19512.8493.44430.863
17CC_DG10DA11:DT9DC10_DD-0.062-0.173.4551.4212.02840.975-0.4740.2513.4392.894-2.02741.047
114CC_DG17DC18:DG2DC3_DD0.801-0.2183.0810.0211.39329.607-0.703-1.5613.0682.724-0.04129.64
12CC_DT5DC6:DG14DA15_DD0.1110.5893.219-0.6258.28629.135-0.563-0.343.25716.0641.21130.272
15CC_DT8DG9:DC11DA12_DD0.6711.8293.2464.1935.73838.692.008-0.4773.5228.572-6.26539.313
110CC_DT13DT14:DA6DA7_DD0.075-0.1333.2770.677-2.80138.0250.152-0.033.279-4.291-1.03738.13
111CC_DT14DT15:DA5DA6_DD-0.050.0213.1762.276-2.88237.5150.3950.3643.158-4.467-3.52937.688
112CC_DT15DC16:DG4DA5_DD-0.055-0.063.372-2.740.88838.904-0.201-0.2593.3651.3314.10739.006

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.