A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 26-Jun-2019 number of released structures: 10246
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NDB ID: NA1184  PDB ID: 3SJM 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14C_DA5:DT15_D0.059-0.121-0.116-5.4550.1494.842
110C_DA11:DT9_D0.113-0.034-0.169-0.4084.133.418
116C_DA17:DT3_D0.114-0.114-0.259-6.1521.2070.415
12C_DC3:DG17_D-0.133-0.2350.017-11.485-3.877-7.753
15C_DG6:DC14_D-0.23-0.0960.22410.6322.4270.569
16C_DG7:DC13_D-0.116-0.1170.24613.48-6.694-0.796
17C_DG8:DC12_D-0.3-0.111-0.126-1.578-8.073.134
111C_DG12:DC8_D-0.282-0.1210.34817.1962.859-0.702
112C_DG13:DC7_D-0.378-0.2070.18711.544-7.655-1.921
113C_DG14:DC6_D-0.235-0.068-0.037-3.49-12.5782.154
117C_DG18:DC2_D-0.231-0.2530.42518.4771.3381.241
11C_DT2:DA18_D0.3510.012-0.015-32.17927.203-6.312
13C_DT4:DA16_D-0.05-0.0730.161-12.68-10.565-2.972
18C_DT9:DA11_D-0.139-0.1150.091-4.049-11.5681.977
19C_DT10:DA10_D-0.153-0.0680.013-8.269-19.318-1.649
114C_DT15:DA5_D-0.144-0.1570.061-5.765-12.9381.166
115C_DT16:DA4_D-0.203-0.1350.008-13.156-21.563-2.266

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.