A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 28-Sep-2022 number of released structures: 12311
Search for released structures

NDB ID: NA1226  PDB ID: 3SPD 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11E_DA2:DT14_F0.149-0.1540.262-26.012-17.5273.248
17E_DA8:DT8_F0.538-0.0540.2140.47-17.4955.459
19E_DA10:DT6_F0.174-0.1330.082-4.257-8.8624.013
113E_DA14:DT2_F1.051-0.0290.63224.376-15.8144.069
14E_DC5:DG11_F-0.105-0.022-0.3027.874-9.0271.276
15E_DC6:DG10_F0.086-0.0440.11311.919-7.0426.317
16E_DG7:DC9_F0.2650.0290.16913.865-11.8169.246
110E_DG11:DC5_F0.4870.089-0.406-7.311-8.3847.024
112E_DG13:DC3_F-0.032-0.1650.0429.276-10.9161.682
12E_DT3:DA13_F-0.214-0.1560.023-8.493-8.228-0.293
13E_DT4:DA12_F-0.044-0.25-0.229-2.067-4.9640.727
18E_DT9:DA7_F-0.351-0.0920.237-9.239-11.6145.238
111E_DT12:DA4_F-1.155-0.355-0.2571.473-10.6743.359
114G_DA2:DT14_H0.188-0.1890.278-20.789-19.9883.782
120G_DA8:DT8_H0.432-0.0080.1370.246-18.3336.178
122G_DA10:DT6_H0.238-0.154-0.033-6.847-10.4274.222
126G_DA14:DT2_H0.94-0.0270.55425.38-15.3073.221
117G_DC5:DG11_H-0.127-0.04-0.3996.927-10.7184.413
118G_DC6:DG10_H0.153-0.080.0768.517-8.6034.623
119G_DG7:DC9_H0.2860.1130.22814.667-11.56710.183
123G_DG11:DC5_H0.229-0.112-0.481-6.75-10.5721.451
125G_DG13:DC3_H-0.043-0.130.03910.338-8.531.437
115G_DT3:DA13_H-0.191-0.1470.059-7.794-6.40.448
116G_DT4:DA12_H-0.016-0.288-0.295-0.684-8.2932.611
121G_DT9:DA7_H-0.37-0.0550.287-7.505-12.5826.673
124G_DT12:DA4_H-1.401-0.393-0.2990.392-8.2932.756

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.