3SPD: Base Pair Morphology Step Parameters

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As of 28-Sep-2022 number of released structures: 12311

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NDB ID: NA1226 PDB ID: 3SPD

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	1	EE_DA2DT3:DA13DT14_FF	-0.562	-1.017	2.811	4.28	6.017	29.384	-2.941	1.783	2.455	11.632	-8.275	30.278
1	7	EE_DA8DT9:DA7DT8_FF	0.262	-0.839	3.454	-0.375	-3.212	32.374	-0.898	-0.537	3.516	-5.744	0.671	32.531
1	9	EE_DA10DG11:DC5DT6_FF	-0.462	0.067	3.461	2.033	9.113	33.393	-1.372	1.107	3.331	15.486	-3.455	34.638
1	4	EE_DC5DC6:DG10DG11_FF	0.776	0.075	3.247	-0.398	5.641	31.222	-0.894	-1.493	3.201	10.374	0.731	31.717
1	5	EE_DC6DG7:DC9DG10_FF	0.666	-0.314	3.125	1.593	7.103	32.539	-1.672	-0.91	3.019	12.482	-2.799	33.322
1	6	EE_DG7DA8:DT8DC9_FF	-0.659	-0.056	3.445	-0.225	0.26	41.35	-0.109	0.907	3.448	0.368	0.318	41.351
1	10	EE_DG11DT12:DA4DC5_FF	-0.161	-0.661	3.014	-2.148	2.388	25.957	-2.053	-0.177	2.946	5.29	4.758	26.151
1	12	EE_DG13DA14:DT2DC3_FF	0.285	-0.328	2.885	-4.616	8.421	38.692	-1.327	-0.883	2.708	12.477	6.839	39.821
1	2	EE_DT3DT4:DA12DA13_FF	0.315	-0.226	3.177	3.468	2.677	32.896	-0.833	0.015	3.165	4.702	-6.09	33.179
1	3	EE_DT4DC5:DG11DA12_FF	0.357	-0.057	3.047	2.652	4.882	33.917	-0.81	-0.217	3.028	8.299	-4.508	34.356
1	8	EE_DT9DA10:DT6DA7_FF	-0.503	-0.304	3.117	0.418	5.772	32.999	-1.426	0.939	3.016	10.066	-0.729	33.489
1	11	EE_DT12DG13:DC3DA4_FF	0.086	0.535	3.189	-3.71	5.36	36.299	0.13	-0.632	3.209	8.52	5.896	36.86
1	13	GG_DA2DT3:DA13DT14_HH	-0.433	-0.998	2.95	3.967	7.124	29.631	-3.086	1.487	2.568	13.608	-7.578	30.708
1	19	GG_DA8DT9:DA7DT8_HH	0.266	-0.757	3.397	-1.129	-2.344	32.698	-0.919	-0.673	3.431	-4.155	2.002	32.798
1	21	GG_DA10DG11:DC5DT6_HH	-0.717	-0.039	3.352	1.15	8.764	30.683	-1.697	1.517	3.191	16.147	-2.119	31.901
1	16	GG_DC5DC6:DG10DG11_HH	0.587	0.14	3.319	-1.362	7.762	31.598	-1.128	-1.289	3.234	13.984	2.453	32.541
1	17	GG_DC6DG7:DC9DG10_HH	0.678	-0.26	3.05	0.39	6.412	31.982	-1.496	-1.144	2.951	11.493	-0.699	32.604
1	18	GG_DG7DA8:DT8DC9_HH	-0.666	-0.05	3.506	0.54	-0.414	40.504	-0.022	1.026	3.498	-0.599	-0.78	40.51
1	22	GG_DG11DT12:DA4DC5_HH	0.04	-0.72	3.048	-3.869	4.326	25.551	-2.659	-1.046	2.852	9.624	8.607	26.192
1	24	GG_DG13DA14:DT2DC3_HH	0.293	-0.308	2.887	-3.921	9.306	37.718	-1.438	-0.85	2.697	14.088	5.936	38.999
1	14	GG_DT3DT4:DA12DA13_HH	0.362	-0.205	3.091	5.089	4.007	32.546	-0.998	0.177	3.064	7.062	-8.969	33.167
1	15	GG_DT4DC5:DG11DA12_HH	0.379	0.127	3.089	3.265	5.259	34.225	-0.553	-0.159	3.095	8.845	-5.493	34.764
1	20	GG_DT9DA10:DT6DA7_HH	-0.609	-0.252	3.224	1.297	7.29	34.203	-1.492	1.205	3.082	12.218	-2.174	34.972
1	23	GG_DT12DG13:DC3DA4_HH	0.041	0.576	3.175	-4.112	2.428	38.503	0.578	-0.552	3.183	3.665	6.206	38.787

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.