A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 8-Jul-2020 number of released structures: 10846
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NDB ID: NA1225  PDB ID: 3SUY 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11X_A10:G88_X-0.4831.54-0.06812.9290.615-21.828
15X_A14:U84_X0.693-0.190.177-3.845-14.346-0.478
16X_A15:U83_X-0.165-0.4480.5546.158-9.056-2.499
17X_A16:U82_X0.345-0.06-0.17-2.089-27.63-1.01
120X_A26:A60_X-3.61.947-0.695-15.649-11.309-114.281
128X_A34:U52_X-0.33-0.010.133-3.983-9.6835.315
132X_A38:U47_X-0.560.4320.55230.1727.18114.322
137X_A44:U91_X1.2480.308-1.134-27.731-8.625-19.531
116X_A63:U72_X0.43-0.272-0.0848.591-4.605-10.709
18X_C17:G81_X0.669-0.2670.381-3.791-16.9111.168
112X_C21:G76_X-0.245-0.007-0.1510.731-9.7851.665
124X_C30:G56_X-0.7830.069-0.86329.759-25.668-5.428
125X_C31:G55_X0.712-0.48-0.26811.868-9.3011.589
133X_C39:U46_X0.798-1.3620.129-8.151-1.12224.495
115X_C62:G73_X0.406-0.1680.1550.2033.4486.62
117X_C64:G71_X-0.131-0.168-0.56211.8-11.4521.466
118X_C65:G70_X-0.243-0.19-0.47914.559-3.403-3.244
12X_G11:C87_X-0.2790.1860.2124.893-10.6631.742
13X_G12:C86_X-0.319-0.193-0.207-8.553-9.7880.674
19X_G18:C80_X-0.0980.0910.234-2.804-6.2971.773
111X_G20:U78_X-2.223-0.637-0.317-3.096-6.9432.524
113X_G22:C75_X0.47-0.2870.137-7.801-23.49-2.989
121X_G27:G59_X-3.5981.0150.21712.237-7.411-62.563
123X_G29:A57_X-0.3891.379-0.48915.798-16.227-4.578
127X_G33:C53_X-1.024-0.227-0.1-2.558-7.3593.251
129X_G35:C51_X-0.41-0.4460.118-5.288-7.66-2.568
130X_G36:C50_X-0.081-0.416-0.203-7.522-10.014-4.99
131X_G37:U49_X-2.122-0.531-1.009-27.15-22.851-8.067
134X_G41:C94_X-0.61-0.334-0.1613.102-6.872-0.064
135X_G42:U93_X-1.5850.0010.425-4.142-12.2212.254
136X_G43:C92_X-0.674-0.51-0.394-8.702-7.79-4.875
119X_G66:A69_X7.338-5.4371.10719.881-6.867-42.273
14X_U13:A85_X-0.199-0.1720.092-3.001-14.449-1.769
110X_U19:A79_X-0.287-0.150.2973.5213.734.458
114X_U23:G74_X2.509-0.7650.142-5.4-5.984-17.146
122X_U28:C58_X-1.0071.312-0.79211.09-10.871-52.659
126X_U32:A54_X0.204-0.252-0.4683.306-4.8363.786

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.