A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 13-Nov-2019 number of released structures: 10455
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NDB ID: NA1239  PDB ID: 3T1H 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
13AA_A10G11:C23U24_AA-0.9-1.723.3071.6737.49234.183-3.931.7352.83212.551-2.80335.009
131AA_A32A33:U534U535_AA0.294-0.9543.0781.6281.83837.106-1.726-0.2583.0392.884-2.55537.184
132AA_A33C34:G533U534_AA-0.014-1.6853.294-3.0189.79239.958-3.399-0.292.81514.054.3341.199
139AA_A53C54:G352U353_AA1.586-2.4512.9526.6813.10821.749-7.174-1.8062.9287.949-17.08622.949
141AA_A55G57:C350U363_AA5.192-1.1075.4815.882-11.655168.358-0.528-2.5955.519-5.858-2.956168.433
142AA_A60G61:C99G100_AA-2.428-3.2382.97885.949-125.50391.053-0.6321.9233.053-65.967-45.176160.562
158AA_A102A322:U318G319_AA-1.62-0.1852.925-6.667-4.619-1.5238.027-20.988-0.87245.206-65.25-8.252
178AA_A112C235:G281U282_AA1.777-2.0263.283-3.931.27592.387-1.427-1.3053.2010.8832.72292.459
1108AA_A134A135:U217U218_AA0.889-1.3933.075-1.66210.77128.134-4.565-2.0012.33921.1793.26830.132
1109AA_A135G136:C216U217_AA0.477-2.1873.4372.8741.72828.018-4.905-0.2843.333.553-5.90828.214
1111AA_A137G204:C214G215_AA-2.402-3.4363.5538.6749.96738.824-5.8814.2772.08414.493-12.61340.928
1122AA_A165A166:A143C144_AA0.801-0.8133.356.629-0.27130.117-1.474-0.1473.451-0.514-12.56730.823
1123AA_A166C168:G142A143_AA3.806-2.3623.1783.5193.69265.26-2.334-3.3793.2343.418-3.25865.437
1129AA_A173U174:A201A202_AA-1.256-0.773.372-11.603-6.31143.403-0.3840.4983.648-8.30615.27345.275
183AA_A238A241:G276A277_AA5.513-0.053.6086.564-4.0638.7468.972-12.2385.823-21.842-35.29111.66
159AA_A322A324:C317U318_AA0.169-1.8513.201-8.7880.5841.158-2.638-1.1193.0780.81412.33142.049
160AA_A324G327:A316C317_AA2.876-1.283.3014.38-7.52577.487-0.797-2.1593.527-5.994-3.48977.898
167AA_A333C334:G345G346_AA0.415-0.373.17-8.21512.90630.014-2.615-1.9762.60123.12814.72233.609
1146AA_A378G379:C374G375_AA2.902-1.2773.4527.711.17251.191-2.216-2.7233.49412.677-8.73752.841
1151AA_A384C385:G366U370_AA6.1940.2173.6324.066-25.02286.3790.749-4.313.714-17.955-2.91889.314
1155AA_A388G389:C361U362_AA3.438-3.0552.975-1.380.92514.182-12.993-14.8782.4273.735.56614.279
1171AA_A425A426:U424A409_AA3.839-0.6794.248-5.263-10.589-45.4522.034.244.38813.437-6.679-46.886
1172AA_A426A427:G405U424_AA2.1681.5742.766-1.684-12.11688.7271.322-1.5692.548-8.631.19989.392
1173AA_A427C428:G404G405_AA0.703-0.5773.497-0.5148.3365.631-0.884-0.6673.4067.6530.47266.1
1191AA_A442C443:G468U470_AA-0.382-1.3242.9387.178-6.713-84.9431.112-0.1352.8664.9575.299-85.402
1180AA_A446A447:C463U464_AA-0.099-1.6443.455-11.05-8.26141.681-1.329-1.0363.615-11.24515.04343.809
1208AA_A546G550:C860U861_AA-0.562-3.079-0.764112.971-123.755-38.1280.807-0.958-2.0464.96559.304-168.249
1283AA_A594C595:G611G612_AA0.7-1.1293.4091.4379.89442.312-2.495-0.8063.10213.483-1.95843.424
1286AA_A597C598:G608U609_AA0.416-0.8183.2734.514-4.48735.775-0.671-0.0213.373-7.234-7.27736.318
1231AA_A615G616:U588G589_AA0.179-0.5143.659-4.56911.50355.861-1.236-0.4643.47712.1144.81257.108
1239AA_A623A625:U624U581_AA-1.875-0.5631.9315.9410.7130.549-1.5734.020.67218.24-27.14835.961
1240AA_A625C626:G580U624_AA-1.969-0.1861.5665.6410.8937.465-0.3373.3471.2621.375-8.7237.883
1246AA_A631G632:C573U574_AA-0.033-2.0732.943-1.3625.32624.451-6.093-0.262.44112.3763.16625.052
1252AA_A638C639:G733U734_AA0.802-1.9743.0784.176-1.00532.024-3.376-0.7263.213-1.811-7.52732.303
1260AA_A646G647:G724G725_AA-0.04-2.0173.1912.4750.06231.326-3.7370.5263.1750.115-4.57431.422
1271AA_A658A659:G697A698_AA0.122-1.0333.5281.35311.77634.14-3.3860.03.02119.35-2.22436.081
1272AA_A659U660:G696G697_AA-0.151-0.8782.827-3.9872.52921.468-3.136-0.9162.6896.68510.5421.975
1280AA_A667G668:U688A689_AA-0.972-1.0443.5432.79617.8650.291-2.3381.2682.98520.277-3.17453.242
1293AA_A705G707:A648A716_AA-4.8960.4751.125-142.682-97.988-92.532-0.313-2.341-1.78849.536-72.13-175.224
1250AA_A736G637:C737U635_AA-0.438-3.898-2.714163.202-37.623-14.0891.612-1.733-0.78120.04486.949-167.578
1225AA_A742G743:G564U565_AA5.271-1.8012.9025.60516.91934.436-4.575-7.352.57226.495-8.77738.651
1297AA_A751G752:C793C794_AA-0.045-1.4783.723-4.1852.33847.167-2.052-0.3263.6412.9135.21547.396
1305AA_A763A764:U784A785_AA-5.318-0.6033.061-6.3235.1040.357-33.7071.0013.8954.95368.0778.134
1306AA_A764A765:G783U784_AA6.185-1.2482.987-1.61410.77931.228-3.668-11.0992.13619.3012.89133.031
1307AA_A765C766:G782G783_AA0.931-0.5473.395-1.5787.01766.491-0.78-0.9093.316.3811.43566.834
1311AA_A811G812:C834G835_AA1.24-0.593.146-1.5316.83152.301-1.084-1.4893.0177.711.72852.734
1326AA_A866U868:A884A885_AA1.696-2.9660.283131.522118.871-10.811.1671.1980.753-60.26166.675-177.293
16AA_A891U13:U20G21_AA0.1720.1182.5062.141-8.9359.37.9441.0221.733-43.516-10.42713.066
110AA_A895A896:A16U17_AA0.516-1.5483.5933.7992.28538.25-2.658-0.2673.5313.473-5.77438.497
111AA_A896U897:G15A16_AA-1.012-1.9643.3372.0795.33229.646-4.812.3492.87210.3-4.01630.181
115AA_A900C901:G1374U1375_AA0.412-1.4653.313.0098.46731.521-4.003-0.2322.85715.203-5.40232.745
125AA_A912C913:G1361U1362_AA0.468-1.8922.82-2.3526.63433.54-4.05-1.0922.37611.3414.0234.25
1367AA_A955C956:C1298A1341_AA-1.5861.3057.155-10.85841.2359.58-8.992-0.6973.23175.35519.84243.654
1370AA_A963G964:C1199U1200_AA1.883-0.5732.793-3.77314.53127.448-3.216-4.0591.97828.1167.30131.216
1375AA_A973U974:A1026C1027_AA-3.285-0.444.064-4.437-4.19544.089-0.0793.8084.38-5.5575.87744.489
1377AA_A978G980:C1020U1022_AA-1.591-3.0785.2370.41816.04270.156-3.4461.3794.52913.777-0.35971.738
1378AA_A982G1004:A1017G1018_AA-0.4723.3441.468-100.47895.47771.4680.956-0.5852.99253.42456.222146.656
1392AA_A1037U1038:A1185U1186_AA0.159-2.1453.375-4.1894.07941.843-3.396-0.6513.1325.6775.83142.231
1426AA_A1105G1106:C1131U1132_AA1.029-0.1113.579-3.54125.36920.044-4.995-2.5132.03452.0617.26632.422
1432AA_A1139C1140:G1162G1159_AA-2.7195.273-4.087-13.88-9.65721.4147.96110.439-3.704-22.0831.73727.224
1341AA_A1206C1207:G931U932_AA-1.088-0.7133.391-1.056-1.44539.811-0.8721.4693.44-2.121.54939.849
1344AA_A1210C1211:G928U929_AA-1.286-2.1092.9213.976-2.11326.948-3.9973.6032.859-4.495-8.45727.315
1351AA_A1217C1218:G1318G922_AA1.159-0.0752.9547.846-0.47620.605-0.02-0.1163.174-1.273-20.97622.038
1439AA_A1219A1220:A1280U1282_AA0.275-2.1863.463-5.9816.112-90.7761.4010.0663.582-4.285-4.193-91.09
1444AA_A1226C1227:G1272U1273_AA0.293-0.7643.3294.7683.21237.229-1.6060.1733.2654.995-7.41537.655
1445AA_A1229C1230:A1269A1270_AA-0.807-1.1913.0523.524-1.77825.472-2.2082.7262.989-4.002-7.93225.771
1446AA_A1233G1234:C1265A1266_AA0.558-1.1723.2279.998-9.536112.303-0.594-0.223.314-5.729-6.006112.86
1357AA_A1287U1288:U1311G1312_AA-0.7030.0833.146-3.8614.05951.765-0.7680.5433.11115.7494.32453.642
1333AA_A1320A1321:U920G921_AA2.038-0.5193.478-0.12212.68855.93-1.269-2.1343.29513.3380.12857.238
1334AA_A1321U1322:G919U920_AA0.79-1.8063.0343.911-4.93841.594-2.021-0.7093.275-6.906-5.46942.047
1453AA_A1331U1332:G1353U1354_AA0.2-0.9442.8695.5792.85745.174-1.4370.1692.8123.698-7.22145.584
1460AA_A1338U1339:A1345G1347_AA0.356-0.4783.69220.64621.726107.605-0.5930.073.60813.302-12.641110.432
1472AA_A1395U1396:G1463G1464_AA0.476-1.7383.162-4.126-2.55227.458-3.01-1.9533.203-5.3238.60627.875
1483AA_A1410C1411:G1448U1449_AA0.285-1.2733.1150.3677.70725.157-4.654-0.5392.6217.187-0.81926.295
1488AA_A1416G1417:C1443G1444_AA-0.041-0.0873.581-2.67521.50957.531-1.213-0.0993.36121.5272.67761.151
1497AA_A1484G1485:C1504U1505_AA0.131-0.8212.463-4.2753.85927.667-2.341-0.9982.2837.968.81928.248
1503AA_A1490C1491:G1498U1499_AA-0.579-1.0993.1821.0728.03930.962-3.3451.2312.79514.744-1.96631.982
133AA_C34G35:C532G533_AA-0.475-1.5573.015-2.92210.69329.767-4.5190.4132.36319.9655.45631.72
135AA_C36U37:A392G531_AA-0.609-2.4532.9667.248-5.902115.309-1.3920.4313.018-3.49-4.286115.55
137AA_C47G52:U354G356_AA-1.782-2.4376.585-21.34622.44573.434-3.1670.2166.01818.01817.13678.843
140AA_C54U56:A351G352_AA-4.185-1.0914.0872.28321.00154.375-2.444.4573.33222.07-2.39958.041
145AA_C63G66:C96G97_AA-3.198-2.0853.459-6.93212.23753.16-3.0333.0353.30313.417.59754.858
147AA_C67G68:A94G95_AA-1.058-1.7093.316.7750.68826.242-3.8163.9142.9051.484-14.61227.096
151AA_C71C72:G90G91_AA0.052-1.8243.2665.5218.30730.142-4.7580.8492.6515.451-10.26831.713
152AA_C72G73:U89G90_AA1.143-2.4313.283.79710.6219.437-9.584-1.7441.89728.554-10.2122.445
154AA_C74G75:C87G88_AA0.26-2.0783.362-1.5646.75725.577-6.227-0.9592.71214.9163.45326.485
185AA_C116G117:C232G233_AA0.131-1.7953.1844.57314.99230.715-5.0430.3912.10626.266-8.01234.397
192AA_C125C126:G225G226_AA-0.881-2.2713.0647.687-3.39626.774-3.9313.5292.962-7.115-16.10428.039
193AA_C126U127:U224G225_AA0.094-1.6333.536-3.1457.98434.373-3.891-0.6293.07113.2555.22235.396
1104AA_C130C131:G221G222_AA-0.373-2.3012.9680.6854.90728.477-5.5350.8772.5349.88-1.3828.896
1105AA_C131G132:C220G221_AA-0.625-2.1913.692-5.3736.92428.573-5.7910.0173.14913.62910.57629.86
1116AA_C159G160:C149G150_AA0.119-2.3733.128-4.02113.28617.663-9.631-1.3731.05336.76511.12722.431
1120AA_C163U164:A145A146_AA-0.763-2.3123.4935.9562.45947.655-3.0391.4223.2653.027-7.33248.064
1124AA_C168C169:G141G142_AA-0.021-2.253.443-7.8352.76236.438-3.89-1.0333.2064.34812.33437.342
1125AA_C169C170:G140G141_AA-0.149-2.2493.2643.286-3.52929.578-3.5960.9913.467-6.856-6.38329.96
1126AA_C170C171:G139G140_AA-0.627-1.9813.456-5.6051.31427.477-4.414-0.113.4182.72911.63928.063
1127AA_C171C172:G138G139_AA-0.491-2.1222.6881.1940.3431.321-3.981.0932.6450.63-2.2131.345
1128AA_C172A173:A202G138_AA-1.697-5.2983.632-3.46831.01489.161-4.1721.1072.16721.5622.41193.369
1103AA_C199C200:G177G178_AA-0.829-1.4533.072-3.30411.19836.613-3.4540.8942.59617.2935.10238.369
179AA_C235C236:G280G281_AA-0.205-1.8082.9966.84210.70730.459-4.6851.3182.1619.356-12.36832.945
180AA_C236C237:G279G280_AA-0.553-1.7553.568-1.37315.46131.254-5.2360.7212.47426.7312.37334.81
181AA_C237C240:C278G279_AA-0.397-1.9183.352-3.9071.19451.206-2.2970.1843.3291.3794.51251.358
182AA_C240A238:A277C278_AA-2.289-0.8023.1076.362-2.8754.694-0.40926.8030.279-23.114-51.1428.411
1131AA_C243U244:G270G271_AA0.093-1.683.5293.4950.68534.472-2.9340.4213.4891.152-5.87834.65
176AA_C285C286:G304G305_AA0.789-2.3023.523.2287.34227.857-6.228-0.8632.90214.865-6.53528.967
177AA_C286G287:C303G304_AA-0.064-1.5483.6563.96510.80334.976-4.0010.673.03717.401-6.38736.764
1143AA_C290U291:G296G297_AA0.553-1.4153.299-1.73.89537.419-2.689-1.0743.1146.0482.63937.651
163AA_C329C330:G313G314_AA-0.441-1.7062.873.2067.0133.825-3.7461.1442.42711.857-5.42434.668
164AA_C330C331:G312G313_AA-0.248-2.0223.195-2.62810.05227.649-5.845-0.0032.34520.1545.26829.501
165AA_C331C332:G311G312_AA0.081-2.0593.2213.64415.99636.379-4.6260.2462.16224.168-5.50539.793
166AA_C332A333:G346G311_AA-0.037-1.8163.3322.07814.88535.018-4.5190.2982.38823.448-3.27438.014
168AA_C334U335:A344G345_AA-1.117-1.7363.361-7.9558.92930.455-4.6330.6092.94116.23314.46232.667
170AA_C336C337:G342G343_AA0.621-2.6223.4663.4176.38420.71-9.261-0.3652.61717.099-9.15121.926
1148AA_C380C381:G372G373_AA0.566-1.7613.526-7.97310.82629.846-4.948-2.3442.52319.80414.58532.671
1149AA_C381U382:G371G372_AA0.993-2.0113.00213.8574.59429.847-4.2540.4582.8438.322-25.10133.153
1152AA_C385G386:C365G366_AA-0.199-1.5433.513-13.71217.2634.617-4.091-1.2092.42826.00420.65940.858
1157AA_C390G391:U45G46_AA0.3-1.1912.4830.00921.71528.5-3.974-0.4881.28537.925-0.01535.693
1159AA_C393G394:C43G44_AA-0.872-1.8163.706-7.21213.43928.731-5.7280.232.74424.98313.40732.453
1161AA_C395C396:G41G42_AA0.643-1.3193.2421.5758.50431.679-3.716-0.8822.8315.226-2.81932.809
1162AA_C396G397:C40G41_AA-0.112-2.0213.075-3.5316.52226.092-5.743-0.5352.49914.0887.62727.108
1164AA_C398U399:U481G39_AA-1.189-3.7443.21-3.50119.62263.084-4.1150.9742.14618.2793.26165.847
1174AA_C428U429:A403G404_AA-0.808-1.943.0410.96614.49523.983-6.6431.8471.59631.457-2.09727.985
1176AA_C430C431:G401G402_AA0.106-2.023.511-5.03314.96130.544-5.627-0.9192.26126.3098.8534.295
1177AA_C431U432:A479G401_AA-3.362-1.7343.129-8.127-1.80480.371-1.2922.3843.431-1.3956.28280.728
1185AA_C436C437:G475G476_AA-1.024-1.923.636-6.99119.03532.005-5.4180.6832.34130.94911.36637.746
1186AA_C437C438:G474G475_AA-0.152-2.1823.036-1.9747.50827.379-5.893-0.0732.37115.4724.06928.438
1187AA_C438G439:C473G474_AA-0.379-1.7943.529-0.4534.79230.312-4.3680.6233.2199.0920.8630.683
1192AA_C443G444:C467G468_AA1.5260.8012.7691.4910.892134.2760.43-0.822.780.484-0.809134.281
1181AA_C449C450:G460G461_AA0.585-0.983.1481.8377.54735.083-2.6-0.7042.90812.334-3.00235.906
1182AA_C450C451:G459G460_AA-0.702-1.9023.95-7.52218.70132.84-5.4410.0422.62929.83812.00238.387
1183AA_C451C452:G458G459_AA-0.063-2.2113.269-7.6116.51830.579-5.086-1.162.69111.96213.96832.142
1184AA_C452G453:A457G458_AA-0.588-0.9873.0762.2217.16659.57-1.3140.6892.9297.182-2.22659.998
1195AA_C484G485:C526G527_AA-0.419-2.0863.112-13.78113.73530.413-5.052-1.0022.02323.41523.49335.981
1197AA_C486C487:G524G525_AA-0.577-1.4563.5342.1295.68637.557-2.9891.1673.2518.761-3.2838.027
1198AA_C487C494:G523G524_AA-2.306-1.1733.619-10.35413.81843.596-2.791.9253.54417.79713.33546.735
1206AA_C490C491:A492G507_AA-3.845-0.6245.725-30.961155.4360.928-3.2441.3740.18788.1817.564158.49
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1355AA_G1285G1286:A1313A1314_AA0.883-0.0512.64614.0078.88834.503-1.0460.1762.70214.025-22.10338.174
1356AA_G1286A1287:G1312A1313_AA1.295-2.314.7652.733-10.501-20.49410.3744.4273.03527.1927.078-23.163
1360AA_G1290G1291:C1308C1309_AA0.385-1.9363.2721.4499.49927.023-5.857-0.4822.47919.56-2.98328.65
1361AA_G1291G1292:C1307C1308_AA0.31-1.213.313-2.2327.15432.659-3.245-0.8962.96212.5163.90633.485
1362AA_G1292G1293:C1306C1307_AA1.002-1.9813.3931.3514.02829.064-4.778-1.6863.1387.972-2.67329.366
1363AA_G1293U1294:A1305C1306_AA-1.12-2.093.4280.8644.37528.455-5.1762.4443.0458.831-1.74428.796
1337AA_G1324C1325:G916C917_AA0.031-0.7312.906-4.5175.91633.782-2.026-0.6592.71610.037.65734.569
1456AA_G1334C1335:G1350C1351_AA-0.285-1.8653.143-2.53-7.41738.431-1.8780.1173.442-11.1263.79539.193
1458AA_G1336G1337:C1348C1349_AA0.458-1.3093.2711.70110.4534.188-3.562-0.5142.78317.269-2.8135.743
1459AA_G1337A1338:G1347C1348_AA-1.402-0.7813.090.039-2.09241.294-0.8931.993.123-2.964-0.05541.345
1462AA_G1383C1384:A1477C1478_AA2.027-1.7563.1642.003-4.41738.782-2.087-2.7873.433-6.621-3.00239.072
1466AA_G1387U1388:U1472C1473_AA-0.716-1.813.1699.41716.29721.888-6.4113.041.17635.606-20.57428.793
1469AA_G1392C1393:G1466C1467_AA-0.804-1.4133.0292.812.62233.122-2.8551.8222.8364.58-4.90933.338
1474AA_G1397G1398:C1461U1462_AA-1.866-1.2333.667-1.48.48435.705-3.2252.7563.36513.5952.24336.693
1476AA_G1403G1404:C1455C1456_AA0.352-2.9862.7691.4982.33430.5-6.029-0.4252.5534.426-2.84130.623
1477AA_G1404G1405:C1454C1455_AA0.231-1.9243.4018.4492.73229.888-4.1171.2213.1635.156-15.94431.15
1478AA_G1405C1406:G1453C1454_AA-1.314-2.2533.2842.9220.52429.475-4.5163.1753.1021.027-5.72429.621
1487AA_G1414A1416:G1444A1445_AA-1.152-0.2275.34214.75416.6557.963-8.6189.9580.93452.81-46.78523.615
1489AA_G1417U1418:C1442C1443_AA-2.113-0.9012.961-2.339.30526.075-3.8683.9072.66319.7914.95527.755
1492AA_G1420C1421:G1439C1440_AA-0.035-1.0342.856-4.0584.44732.043-2.503-0.542.6767.9687.27132.589
1494AA_G1427C1428:G1435C1436_AA-0.1-2.6123.339-0.9251.39436.819-4.3220.0323.2432.2051.46436.856
1498AA_G1485C1486:G1503C1504_AA0.434-1.3553.0544.8391.92233.699-2.596-0.0233.0063.291-8.28634.087
1501AA_G1488U1489:G1500C1501_AA0.567-1.0893.0233.99312.0635.2-3.105-0.422.57219.187-6.35237.354
15AA_U12A891:G21G22_AA-2.239-3.253.557-12.1887.0766.932-18.073-2.4381.84832.10355.29415.699
17AA_U13G893:C19U20_AA1.438-2.7673.796-4.7215.75882.703-2.475-1.1963.25611.8223.54184.033
130AA_U30A32:U535A536_AA-0.873-1.2323.0895.21614.29726.878-4.6422.491.99628.081-10.24530.818
136AA_U49C47:G356U360_AA-0.254-2.1282.9427.087-11.812-114.781.371-0.0842.8046.9974.199-115.309
144AA_U62C63:G97G98_AA-0.371-1.9862.9171.0967.96119.569-7.9771.3641.94322.246-3.06221.14
173AA_U107G108:C307A308_AA-0.485-1.0373.0671.0747.29139.743-2.2470.8122.82710.614-1.56440.394
187AA_U118G119:C230G231_AA1.027-1.3882.9082.17513.32131.254-4.12-1.4722.21523.405-3.82233.978
191AA_U122C125:G226G227_AA-0.887-1.8083.328-2.5940.44237.641-2.8541.0283.3590.6844.01437.729
1115AA_U158C159:G150G151_AA-0.674-1.5653.825-6.5922.00222.547-6.8560.0141.78344.16313.22832.078
1121AA_U164A165:C144A145_AA-0.5060.6913.22-2.024-1.0635.30812.77-6.2493.008-10.84220.6395.779
198AA_U194G195:C182G183_AA0.251-1.5192.9834.12918.77920.874-6.3680.2051.2542.072-9.2528.308
1100AA_U196G197:C180C181_AA1.232-1.5422.946-6.67315.13133.516-3.965-2.6121.83624.47410.79437.269
1102AA_U198C199:G178A179_AA0.659-1.7883.4242.3557.75938.112-3.624-0.7033.0511.72-3.55738.933
1132AA_U244U247:A269G270_AA2.364-0.4486.86321.059-95.73124.6194.336-0.5222.814-77.648-17.081100.29
1133AA_U247U248:A268A269_AA-1.16-1.1273.372-10.19824.90637.55-3.580.6132.44233.89713.87945.914
1134AA_U248G249:C267A268_AA0.002-1.6133.318-2.7566.57329.605-4.339-0.5352.88912.6335.29830.432
1137AA_U251G252:C264A265_AA0.786-1.0953.0374.86914.06733.378-3.473-0.662.4823.116-8.00236.461
1142AA_U289C290:G297A298_AA-0.438-1.5523.0751.2169.59732.37-4.0310.9272.50816.753-2.12333.748
1144AA_U291G292:A295G296_AA-2.223-1.3972.8232.1034.4850.935-1.8752.6952.6125.195-2.43951.159
169AA_U335C336:G343A344_AA-0.856-1.5853.148-1.133-2.28636.786-2.2031.2033.261-3.6171.79336.871
1150AA_U382A384:U370G371_AA-2.102-0.8783.3531.71916.54336.384-3.1213.2722.6324.955-2.59339.888
1165AA_U399U400:A482U481_AA0.135-1.4252.938-1.3166.35432.579-3.406-0.4262.61411.1882.31833.202
1169AA_U422G423:A410G411_AA-2.9680.772-0.63967.58158.676179.8560.3861.484-0.6479.338-33.79179.991
1175AA_U429C430:G402A403_AA0.829-0.6023.1445.0799.42336.019-2.115-0.6532.98414.839-7.99937.526
1178AA_U432G433:A480A479_AA1.47-1.3333.2129.866-2.89913.263-2.3172.6323.634-10.693-36.38716.769
1200AA_U495C496:G521A522_AA-0.532-0.8933.436-4.9629.69832.612-3.0710.1043.09816.6998.54534.337
1235AA_U619G620:C584A585_AA-0.442-1.3733.547-0.32216.85925.863-5.7760.7712.25633.5120.6430.796
1244AA_U629C630:G575G576_AA-0.086-1.4972.9094.2979.27629.465-4.240.8332.30717.584-8.14531.151
1256AA_U642G643:C728A729_AA0.107-1.2643.5891.73115.00826.408-5.4420.1452.52329.939-3.45430.357
1265AA_U652G653:C719A720_AA-0.407-1.2082.829-0.4472.3732.925-2.4680.6512.7434.1750.78733.011
1268AA_U655G656:C700G717_AA-1.045-1.9293.5961.67911.70625.125-6.7492.572.425.203-3.61527.728
1273AA_U660U661:A695G696_AA0.241-0.9923.664-9.52911.55840.031-2.617-1.3643.1416.21313.36742.634
1274AA_U661C662:G694A695_AA0.087-1.0962.9681.1182.27538.214-1.927-0.0072.9023.47-1.70538.295
1282AA_U669A670:G686A687_AA5.9820.1833.64917.606-5.202-13.409-0.01616.721-2.41215.34451.933-22.7
1223AA_U740G741:A566G567_AA-0.402-1.093.5174.7195.053.005-1.5460.7623.3645.575-5.26253.417
1301AA_U755G756:C789A790_AA0.531-1.7892.9392.27114.91329.716-5.075-0.6311.88526.998-4.11133.249
1219AA_U803G553:C843A850_AA-3.733-2.3710.1078.467-174.048-27.0780.402-1.907-2.189.2214.341-174.414
1314AA_U814C815:G831G832_AA-0.37-2.3683.67-10.50720.29330.24-6.126-0.7051.81733.54117.36637.741
1316AA_U816C817:G829G830_AA-0.747-2.053.164-2.99214.93827.167-6.1910.921.87829.085.82431.077
1318AA_U818G819:U827G828_AA0.121-3.132.5366.02114.9612.321-11.2520.604-0.71949.033-19.73620.27
1327AA_U868C870:U239A884_AA0.553-3.7686.0861.99212.57114.095-20.826-0.1892.10541.751-6.61618.97
112AA_U897U898:A1378G15_AA1.29-1.3243.0145.04512.12327.802-4.59-1.5672.43223.632-9.83630.692
113AA_U898G899:C1377A1378_AA0.59-1.373.353.24218.66829.926-4.812-0.532.19832.39-5.62635.304
1340AA_U937A1206:U932U933_AA-2.354-1.9380.97674.231-159.641115.094-0.6781.3131.234-80.1-37.246177.884
1352AA_U938C939:G950A1182_AA0.933-4.8093.407-0.479-4.185-28.02810.7291.8022.6918.578-0.982-28.337
1386AA_U990G991:A994G995_AA-1.516-0.8382.6514.7073.78941.038-1.4972.5292.3875.369-6.6741.462
1391AA_U1034A1037:U1186G1187_AA0.415-2.0873.252-6.83316.36325.266-6.496-1.8531.49832.75713.67930.785
1393AA_U1038G1039:C1184A1185_AA-1.4-2.2143.4578.7321.16228.541-4.5364.5052.8242.289-17.20129.843
1399AA_U1044C1045:G1174U1175_AA0.016-1.0883.6575.8789.60625.481-4.7111.4662.98920.547-12.57327.821
1404AA_U1052C1053:G1086A1087_AA-0.393-2.0723.2211.4012.21830.718-4.3131.0023.0474.177-2.63830.827
1407AA_U1055G1056:U1065A1084_AA1.526-1.2633.220.95114.64835.679-3.59-2.2062.56422.756-1.47838.489
1411AA_U1068G1069:C1080G1081_AA1.289-1.4944.249-9.43313.39234.931-4.225-3.3353.06120.94614.75338.473
1424AA_U1103U1104:A1133A1134_AA1.23-0.5423.435-3.6998.78839.413-1.783-2.1973.12512.8035.38940.506
1425AA_U1104A1105:U1132A1133_AA0.022-1.3772.23210.55626.7124.756-3.9140.6710.52646.557-18.437.746
1436AA_U1141C1145:G1154G1155_AA-1.574-1.3893.0297.692-4.09574.989-1.0221.4992.942-3.353-6.29875.42
1347AA_U1213G1214:C925A926_AA1.081-1.5253.4911.4712.23832.788-3.098-1.6433.4263.957-2.60132.894
1350AA_U1216A1217:G922A923_AA0.149-2.3482.95813.22-1.26829.908-3.9711.872.863-2.318-24.17232.662
1358AA_U1288U1289:A1310U1311_AA-0.833-1.1562.64-4.4144.39335.627-2.3590.8442.5657.1137.14736.15
1359AA_U1289G1290:C1309A1310_AA-1.664-1.9043.415-0.4810.36628.669-5.5933.0772.61120.120.93130.452
1364AA_U1294C1295:G1304A1305_AA0.628-1.1173.092-2.4597.20140.746-2.281-1.1272.82310.2343.49541.42
1366AA_U1296A955:A1341A1300_AA0.5221.0123.648.172-0.936124.030.582-0.2173.653-0.53-4.625124.187
1335AA_U1322C1323:G918G919_AA-1.17-2.4873.6618.408-3.64218.661-5.1437.2973.256-10.454-24.13420.771
1452AA_U1329A1357:A1327G1328_AA-0.49-6.1051.17864.781150.56-124.8642.512-0.013.711-76.1132.748-172.571
1454AA_U1332C1333:G1352G1353_AA0.266-2.2253.2148.35310.07220.689-7.9231.5851.90925.068-20.7924.441
1467AA_U1388C1389:G1471U1472_AA1.963-2.14.221-0.80512.82846.794-3.761-2.4683.53115.8050.99248.431
1473AA_U1396G1397:U1462G1463_AA0.772-2.0953.943-1.3520.00615.112-10.099-2.1350.68653.2373.59325.061
1480AA_U1407C1408:G1451G1452_AA1.261-1.7082.8443.4896.425.944-5.032-1.9642.50313.909-7.58226.932
1482AA_U1409A1410:U1449A1450_AA-1.173-0.6472.67311.48733.9718.445-3.4752.5640.37260.296-20.3940.186
1490AA_U1418C1419:G1441C1442_AA1.645-1.4483.16-0.176.36734.231-3.319-2.7742.84510.7020.28634.801
1500AA_U1487G1488:C1501G1502_AA-1.141-0.6493.197-4.78830.78525.182-4.2711.1571.68651.367.98939.862
1502AA_U1489A1490:U1499G1500_AA0.414-1.483.153.47512.5325.407-5.502-0.1492.22526.398-7.32128.492
1505WW_A1A2:U35U36_XX-1.229-1.8053.17-9.6193.66737.197-3.1850.6823.1935.61814.73738.546
1506WW_A2A3:70U34U35_XX0.693-1.3612.7846.7575.60332.03-3.172-0.2612.6049.923-11.96733.181

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.