A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Aug-2019 number of released structures: 10334
Search for released structures

NDB ID: NA1257  PDB ID: 3T5H 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12B_DA407:DT512_C0.014-0.228-0.266-6.317-2.052-0.38
13B_DA408:DT511_C0.022-0.0220.066-0.952-7.9691.708
15B_DC410:DG509_C0.0340.066-0.0074.657-8.7053.465
16B_DC411:DG508_C0.0380.0740.039-5.122-7.490.663
19B_DC414:DG505_C-0.176-0.133-0.125-3.365-5.981-1.183
110B_DC415:DG504_C0.096-0.0830.052-6.048-7.12.878
111B_DC416:DG503_C0.3440.1380.087-2.807-4.92-0.556
112B_DC417:DG502_C0.065-0.112-0.285-0.683-2.1713.064
113B_DC418:DG501_C0.382-0.107-0.0050.569-2.8034.101
11B_DG406:DC513_C-0.509-0.036-0.732-27.301-9.5151.462
14B_DT409:DA510_C-0.2570.060.1588.76-8.6744.545
17B_DT412:DA507_C-0.332-0.1650.075-2.778-5.5497.737
18B_DT413:DA506_C-0.209-0.019-0.111-2.571-10.632-1.687

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.