A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
Search for released structures

NDB ID: NA1257  PDB ID: 3T5H 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
12BB_DA407DA408:DT511DT512_CC-0.6-0.163.251-2.4512.77235.364-0.6660.6263.2634.5484.02135.551
13BB_DA408DT409:DA510DT511_CC0.15-0.773.07-2.0443.15925.25-2.575-0.8772.9327.1764.64225.524
15BB_DC410DC411:DG508DG509_CC-0.512-0.7393.5090.2394.9135.162-1.9710.8773.3758.078-0.39335.493
16BB_DC411DT412:DA507DG508_CC0.06-0.1253.261-0.1517.37831.069-1.558-0.1363.14913.5350.27631.912
19BB_DC414DC415:DG504DG505_CC0.116-0.753.3710.349.98229.279-3.335-0.1522.96219.061-0.6530.901
110BB_DC415DC416:DG503DG504_CC-0.474-0.4493.251-1.1628.24134.771-1.9010.6083.08113.551.9135.723
111BB_DC416DC417:DG502DG503_CC1.349-0.183.3276.5583.60330.445-1.051-1.1893.4916.733-12.25731.33
112BB_DC417DC418:DG501DG502_CC-0.4910.1053.335-1.9276.18932.398-0.8940.5293.32110.9563.4133.024
11BB_DG406DA407:DT512DC513_CC0.271-0.162.874-4.3893.91427.993-1.096-1.4152.7527.9798.94928.592
14BB_DT409DC410:DG509DA510_CC0.393-0.2133.3830.866-2.05438.434-0.059-0.4853.397-3.117-1.31438.497
17BB_DT412DT413:DA506DA507_CC-0.029-0.3143.2810.6542.61433.715-0.9610.1563.2474.498-1.12633.82
18BB_DT413DC414:DG505DA506_CC0.481-0.4853.250.0682.6832.071-1.348-0.8563.2014.841-0.12232.18

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.