A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 19-Jan-2022 number of released structures: 11891
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NDB ID: NA1326  PDB ID: 3U44 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14X_DA4:DT40_X0.098-0.098-0.147-5.908-1.93-2.039
15X_DA5:DT39_X-0.233-0.2380.523-8.914-13.653-3.559
110X_DA10:DT34_X-0.015-0.239-0.7588.576-9.6021.626
113X_DA13:DT31_X-0.403-0.2340.19-8.594-11.4691.257
12X_DC2:DG42_X1.012-0.467-0.566.523-4.357-7.026
18X_DC8:DG36_X0.632-0.2490.1115.293-12.499-1.51
112X_DC12:DG32_X0.446-0.1940.122-2.966-18.973-0.945
114X_DC14:DG30_X0.021-0.0950.09-20.349-16.8031.529
17X_DG7:DC37_X-0.711-0.3280.6023.622-1.973-2.69
19X_DG9:DC35_X-0.033-0.0780.3327.9292.592-0.138
111X_DG11:DC33_X-0.33-0.210.287-0.046-20.169-2.36
116X_DG16:DC28_X-0.117-0.1250.076-4.978-13.373-2.784
11X_DT1:DA43_X0.092-0.09-0.0260.3610.39-7.019
13X_DT3:DA41_X-0.0890.001-0.0299.92-23.847-17.472
16X_DT6:DA38_X0.265-0.1580.248-12.98-11.492-5.832
115X_DT15:DA29_X1.27-0.047-0.163-15.897-1.921-16.566

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.