A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 4-Dec-2019 number of released structures: 10490
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NDB ID: NA2359  PDB ID: 3W96 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11I_DA1:DT292_J0.125-0.12-0.387-16.33123.039-4.254
14I_DA4:DT289_J0.075-0.103-0.4496.323-19.6275.799
15I_DA5:DT288_J0.139-0.088-0.369-1.183-22.0725.598
17I_DA7:DT286_J0.0990.023-0.29413.141-16.071-0.302
111I_DA11:DT282_J-0.018-0.1080.0851.2253.283-7.476
117I_DA17:DT276_J0.038-0.0030.696.744-4.287-1.457
119I_DA19:DT274_J0.047-0.221-0.425.99-24.1629.552
124I_DA24:DT269_J-0.025-0.1860.076-10.519-12.071-4.389
127I_DA27:DT266_J0.130.099-0.23-14.545-29.923-10.237
128I_DA28:DT265_J0.008-0.1770.13911.803-3.9112.65
129I_DA29:DT264_J0.2530.0140.12810.006-12.833-9.889
130I_DA30:DT263_J-0.069-0.190.3983.806-13.9491.181
135I_DA35:DT258_J0.008-0.2160.385-9.3361.6781.629
141I_DA41:DT252_J0.147-0.2390.49111.04-11.247.581
142I_DA42:DT251_J-0.03-0.169-0.284-15.7745.324-0.794
143I_DA43:DT250_J0.099-0.2680.444-6.6111.594.694
151I_DA51:DT242_J0.093-0.046-0.002-12.403-6.6258.226
154I_DA54:DT239_J0.075-0.271-1.221-11.3022.419-2.855
155I_DA55:DT238_J-0.135-0.157-0.868-8.059-6.711-1.531
156I_DA56:DT237_J0.157-0.102-0.0355.35-22.445-4.723
157I_DA57:DT236_J0.137-0.017-0.2043.544-16.637-1.655
161I_DA61:DT232_J0.201-0.091-0.4134.965-12.959.155
167I_DA67:DT226_J0.275-0.2210.68612.175-26.562-15.008
172I_DA72:DT221_J0.0150.151-0.0344.373.644-1.475
173I_DA73:DT220_J0.101-0.1-0.232-2.8574.079-0.984
177I_DA77:DT216_J0.2230.1480.4279.36-10.496-12.918
182I_DA82:DT211_J0.212-0.039-0.747-10.287-3.852-4.318
183I_DA83:DT210_J0.169-0.208-0.64-9.615-1.0615.181
185I_DA85:DT208_J-0.0440.015-0.1737.282-5.8237.415
195I_DA95:DT198_J0.213-0.22-1.201-14.8070.2841.148
199I_DA99:DT194_J0.0380.135-0.0274.118-32.315-7.437
1102I_DA102:DT191_J0.098-0.074-0.7622.641-7.3953.484
1109I_DA109:DT184_J-0.031-0.262-0.342-1.704-7.1755.7
1110I_DA110:DT183_J0.020.0170.09912.849-1.08-2.26
1111I_DA111:DT182_J0.206-0.2620.8769.133-0.435.299
1113I_DA113:DT180_J-0.108-0.1640.477.873-8.0884.064
1115I_DA115:DT178_J0.18-0.106-0.27615.584-6.134-1.345
1124I_DA124:DT169_J0.001-0.248-0.05110.839-23.5154.813
1126I_DA126:DT167_J-0.1060.066-0.904-17.539-13.508-6.031
1127I_DA127:DT166_J0.4720.037-0.169-13.326-8.274.991
1133I_DA133:DT160_J0.0140.043-0.212-10.12-17.7952.454
1139I_DA139:DT154_J0.012-0.2480.6976.376-17.914-6.722
1141I_DA141:DT152_J0.2-0.038-0.23-1.423-24.659-0.796
1145I_DA145:DT148_J0.0380.0260.12-9.964-21.223-1.43
13I_DC3:DG290_J0.37-0.152-0.71714.044-8.3035.86
19I_DC9:DG284_J0.1310.088-0.15-4.69-9.783.174
110I_DC10:DG283_J0.303-0.1360.455-0.668.8250.621
112I_DC12:DG281_J0.0140.015-0.1769.313-11.022-2.898
113I_DC13:DG280_J0.0070.020.223-19.412-12.1863.92
116I_DC16:DG277_J0.509-0.045-0.20722.313-20.014-1.036
122I_DC22:DG271_J0.049-0.1090.999-12.632-16.924-3.102
125I_DC25:DG268_J0.0880.0140.706-16.338-0.9580.051
126I_DC26:DG267_J0.188-0.4011.239-9.9346.0020.825
144I_DC44:DG249_J0.188-0.146-0.8893.786-17.58510.801
147I_DC47:DG246_J0.203-0.262-0.2083.792-35.2985.744
149I_DC49:DG244_J0.090.0910.603-22.001-8.393-1.549
150I_DC50:DG243_J0.107-0.1540.188-15.322-6.626-0.325
153I_DC53:DG240_J0.3440.0530.096-0.746-20.8784.7
160I_DC60:DG233_J0.1620.0140.2934.5140.514-0.08
166I_DC66:DG227_J-0.4140.032-0.49716.8-5.872-2.732
169I_DC69:DG224_J-0.176-0.026-0.1471.093-17.418-2.589
176I_DC76:DG217_J-0.068-0.045-0.0677.6750.118-4.827
179I_DC79:DG214_J0.088-0.0760.3957.084-19.449-2.044
184I_DC84:DG209_J-0.259-0.1020.491.19710.9242.156
188I_DC88:DG205_J0.020.031-0.005-2.526-24.3140.202
189I_DC89:DG204_J-0.0280.0090.579-16.276-2.963-4.881
1101I_DC101:DG192_J0.220.093-0.41413.325-24.3823.88
1107I_DC107:DG186_J0.141-0.0170.374-10.84615.1436.491
1108I_DC108:DG185_J-0.3750.1330.1794.578-23.733-4.338
1114I_DC114:DG179_J-0.205-0.0130.50212.543-2.057-3.035
1116I_DC116:DG177_J0.226-0.3191.1590.35612.3968.224
1129I_DC129:DG164_J-0.065-0.3321.366-15.8367.3560.261
1132I_DC132:DG161_J0.098-0.2040.0860.903-15.493-0.031
115I_DG15:DC278_J-0.3640.025-0.545-14.344-17.8844.443
118I_DG18:DC275_J-0.104-0.0410.1465.954-21.3156.437
131I_DG31:DC262_J-0.148-0.1820.9753.376-7.6871.334
133I_DG33:DC260_J-0.144-0.120.5993.74-5.399-0.455
139I_DG39:DC254_J-0.2720.08-0.0250.672-3.153-0.107
140I_DG40:DC253_J0.0220.0240.1772.888-19.652-6.482
146I_DG46:DC247_J-0.292-0.025-0.736-6.169-3.9827.053
158I_DG58:DC235_J-0.208-0.108-0.352-4.6981.453-4.127
159I_DG59:DC234_J-0.1840.0410.123-2.861-15.4182.984
163I_DG63:DC230_J0.123-0.0460.382-2.894-3.6150.982
168I_DG68:DC225_J-0.267-0.256-0.564-0.06212.791-2.336
171I_DG71:DC222_J-0.0240.0230.6154.02512.55110.879
178I_DG78:DC215_J-0.122-0.1150.26718.15516.2410.34
181I_DG81:DC212_J-0.2240.099-0.027-3.554-3.1975.443
187I_DG87:DC206_J-0.1720.041-0.757-12.0925.9445.696
194I_DG94:DC199_J-0.085-0.02-0.608-1.045-2.4020.825
197I_DG97:DC196_J-0.3080.0940.064-2.949-9.394-0.458
198I_DG98:DC195_J-0.273-0.255-0.8-1.374-9.8555.565
1100I_DG100:DC193_J0.013-0.304-0.685-1.357-3.6853.112
1103I_DG103:DC190_J0.0190.0720.4914.4826.1050.331
1121I_DG121:DC172_J0.0150.161-0.2337.299-16.684-2.449
1122I_DG122:DC171_J0.1920.0130.13112.4320.18-4.107
1125I_DG125:DC168_J-0.312-0.154-0.611-6.84-11.252-1.007
1131I_DG131:DC162_J-0.399-0.238-0.414-6.01-28.7597.309
1134I_DG134:DC159_J-0.15-0.152-0.707-5.516-11.5-2.227
1135I_DG135:DC158_J-0.004-0.0230.419-4.413-10.6270.423
1137I_DG137:DC156_J-0.277-0.007-0.2790.08-6.2993.783
1138I_DG138:DC155_J-0.196-0.017-0.601-3.83-9.8411.153
1144I_DG144:DC149_J-0.211-0.041-0.457-0.472-24.8343.518
12I_DT2:DA291_J0.068-0.070.19-12.4294.601-0.513
16I_DT6:DA287_J0.013-0.164-0.54519.9854.5080.066
18I_DT8:DA285_J-0.0690.064-0.366-0.911-10.4290.028
114I_DT14:DA279_J-0.011-0.0710.661-19.643-22.017-3.156
120I_DT20:DA273_J-0.122-0.113-0.5151.632-24.9090.869
121I_DT21:DA272_J-0.015-0.1120.158-1.189-16.0724.709
123I_DT23:DA270_J-0.1960.0050.322-14.585-10.348-3.569
132I_DT32:DA261_J-0.166-0.0910.2431.0892.986-2.775
134I_DT34:DA259_J-0.142-0.3631.249-13.887-3.3832.167
136I_DT36:DA257_J-0.159-0.0630.691-3.839-4.861-4.931
137I_DT37:DA256_J-0.184-0.2360.877-7.01-6.491-1.917
138I_DT38:DA255_J-0.2450.097-0.156-9.233-29.801-3.788
145I_DT45:DA248_J-0.265-0.2210.977-12.043-13.941-9.542
148I_DT48:DA245_J-0.1830.012-0.4721.593-9.6561.811
152I_DT52:DA241_J-0.211-0.039-0.3170.268-21.859-11.335
162I_DT62:DA231_J-0.072-0.078-0.4025.697-12.4390.893
164I_DT64:DA229_J0.05-0.047-0.388-3.461-11.8641.965
165I_DT65:DA228_J-0.026-0.066-0.0036.661-0.895-4.596
170I_DT70:DA223_J-0.395-0.169-1.331-0.342-2.602-11.891
174I_DT74:DA219_J0.020.043-0.32516.6442.260.584
175I_DT75:DA218_J-0.112-0.054-0.3111.251-8.627-0.181
180I_DT80:DA213_J-0.044-0.186-0.2855.116-0.217-1.326
186I_DT86:DA207_J-0.135-0.245-0.5642.696-6.902-1.35
190I_DT90:DA203_J-0.0690.049-0.014-6.851-14.518-3.032
191I_DT91:DA202_J-0.108-0.0440.113-7.731-17.2640.166
192I_DT92:DA201_J-0.012-0.229-0.111-14.107-17.0369.645
193I_DT93:DA200_J0.091-0.149-0.128-3.787-1.7380.57
196I_DT96:DA197_J-0.0970.0410.14211.538-5.067-1.306
1104I_DT104:DA189_J-0.136-0.1440.4543.751-15.7992.571
1105I_DT105:DA188_J-0.135-0.1720.718-0.563-9.7313.828
1106I_DT106:DA187_J-0.106-0.1670.881-12.226-11.726-1.704
1112I_DT112:DA181_J-0.013-0.1840.243.578-2.664-0.449
1117I_DT117:DA176_J-0.229-0.0980.696-0.206-6.972-3.756
1118I_DT118:DA175_J-0.188-0.1260.546-13.908-5.504-0.234
1119I_DT119:DA174_J-0.307-0.2510.964-9.787-20.54-3.482
1120I_DT120:DA173_J-0.251-0.1020.9327.234-5.8644.829
1123I_DT123:DA170_J-0.273-0.058-0.67121.999-7.036-1.598
1128I_DT128:DA165_J-0.051-0.1120.165-8.844-20.698-3.026
1130I_DT130:DA163_J-0.4250.0360.174-1.074-23.973-11.858
1136I_DT136:DA157_J-0.0550.041-0.051-9.302-0.155-13.067
1140I_DT140:DA153_J-0.244-0.1580.549-7.952-11.4534.673
1142I_DT142:DA151_J-0.1020.01-0.254-0.668-19.6651.891
1143I_DT143:DA150_J0.1-0.079-0.08410.485-13.2931.644

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.