A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Aug-2019 number of released structures: 10334
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NDB ID: NA2359  PDB ID: 3W96 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
11II_DA1DT2:DA291DT292_JJ-0.166-1.2383.552-2.451-1.43932.097-1.95-0.1793.605-2.5954.42132.219
14II_DA4DA5:DT288DT289_JJ-0.155-0.0063.327-0.8119.25737.831-1.1540.1333.2414.0211.22938.915
15II_DA5DT6:DA287DT288_JJ0.402-0.0282.678-1.859-3.66135.0660.396-0.8872.644-6.0513.07335.298
17II_DA7DT8:DA285DT286_JJ-0.107-0.7373.6840.4-0.74432.929-1.1580.2653.698-1.312-0.70532.939
111II_DA11DC12:DG281DT282_JJ-0.085-0.6023.052.1992.95634.067-1.4510.4632.9785.028-3.73934.26
117II_DA17DG18:DC275DT276_JJ0.3340.2383.3115.7369.0334.814-0.9150.2893.28214.668-9.31836.372
119II_DA19DT20:DA273DT274_JJ-0.377-0.483.476-4.3493.97835.497-1.379-0.0473.4246.477.07335.967
124II_DA24DC25:DG268DT269_JJ0.1280.5253.402-3.9664.44235.8950.193-0.7833.4087.1476.38236.37
127II_DA27DA28:DT265DT266_JJ0.2490.1252.682-9.94-11.17833.5141.44-1.52.359-18.29516.26936.613
128II_DA28DA29:DT264DT265_JJ-0.7780.3293.21-4.45-9.41242.7641.3160.6253.135-12.6845.99743.955
129II_DA29DA30:DT263DT264_JJ0.056-0.6393.372-0.9240.29334.1-1.138-0.2473.3640.4991.57534.114
130II_DA30DG31:DC262DT263_JJ0.159-0.3023.428-4.4621.32736.378-0.67-0.8923.3732.1147.11136.665
135II_DA35DT36:DA257DT258_JJ0.015-1.3633.2540.794-6.01134.184-1.3350.1013.436-10.126-1.33834.702
141II_DA41DA42:DT251DT252_JJ-0.9370.6324.036-4.03725.69136.656-2.2880.7423.77135.8525.63344.684
142II_DA42DA43:DT250DT251_JJ-0.151-0.9533.18-5.2120.0629.479-1.857-0.7613.1580.11810.14229.926
143II_DA43DC44:DG249DT250_JJ0.883-0.3993.40814.9214.12529.677-1.4481.193.3767.45-26.94633.391
151II_DA51DT52:DA241DT242_JJ-1.333-0.0062.915-0.897-1.61929.6310.2942.4322.949-3.1621.75129.687
154II_DA54DA55:DT238DT239_JJ-0.0440.4413.143-5.11214.32520.45-3.154-1.3822.78834.79812.41925.437
155II_DA55DA56:DT237DT238_JJ-0.325-0.0013.3354.0242.9139.66-0.340.9453.284.269-5.90239.957
156II_DA56DA57:DT236DT237_JJ0.4840.7563.1024.11-0.78541.1911.149-0.2663.12-1.112-5.82341.394
157II_DA57DG58:DC235DT236_JJ0.4622.1323.529-1.254-15.64141.9284.196-0.722.598-20.9961.68444.644
161II_DA61DT62:DA231DT232_JJ-0.149-0.7893.4661.7195.77331.04-2.5590.6043.25710.662-3.17431.605
167II_DA67DG68:DC225DT226_JJ1.5380.9943.8798.774-5.88437.222.385-1.0083.933-8.999-13.41938.639
172II_DA72DA73:DT220DT221_JJ-0.443-0.263.595-1.8953.75331.278-1.2450.4273.566.9213.49431.553
173II_DA73DT74:DA219DT220_JJ-0.364-0.6882.9040.461.4232.226-1.4610.7272.8672.556-0.82732.26
177II_DA77DG78:DC215DT216_JJ2.010.4753.2324.091-11.9234.5682.385-2.6293.116-19.284-6.61936.727
182II_DA82DA83:DT210DT211_JJ0.728-0.2873.22-2.18915.30632.757-2.545-1.4722.76725.4493.6436.132
183II_DA83DC84:DG209DT210_JJ-0.174-0.0553.318-9.364-1.18734.3510.086-1.113.252-1.96415.49535.586
185II_DA85DT86:DA207DT208_JJ-0.289-0.7663.3281.8098.19334.642-2.4310.7343.05513.515-2.98435.613
195II_DA95DT96:DA197DT198_JJ0.009-0.8093.049-4.1795.80625.436-3.172-1.0282.76212.8659.26126.407
199II_DA99DG100:DC193DT194_JJ1.5211.4923.3855.7322.12936.8562.027-1.5563.653.34-8.9937.343
1102II_DA102DG103:DC190DT191_JJ-0.4020.1733.23-11.96911.56332.172-1.392-1.0833.0719.33520.01436.12
1109II_DA109DA110:DT183DT184_JJ-0.211-0.5652.782-6.242-3.38230.532-0.493-0.6292.814-6.31511.65531.327
1110II_DA110DA111:DT182DT183_JJ-0.1650.1023.186-10.9552.50843.043-0.093-0.7783.1363.3514.63544.419
1111II_DA111DT112:DA181DT182_JJ-1.059-1.3153.8790.607-20.84532.0341.4571.7253.966-33.686-0.98138.074
1113II_DA113DC114:DG179DT180_JJ-0.508-0.633.135-2.6826.49728.471-2.570.4572.95612.9615.3529.309
1115II_DA115DC116:DG177DT178_JJ0.849-1.1773.84-11.6782.03735.827-2.121-3.0223.3423.20518.37537.676
1124II_DA124DG125:DC168DT169_JJ-0.476-0.4273.74-4.9512.13740.519-0.8820.0583.7443.077.1140.861
1126II_DA126DA127:DT166DT167_JJ0.050.0183.275-4.039-4.29834.3190.685-0.6993.223-7.2176.78234.807
1127II_DA127DT128:DA165DT166_JJ-0.49-0.7093.3054.559-9.16335.9640.1391.3853.298-14.483-7.20637.345
1133II_DA133DG134:DC159DT160_JJ-0.575-0.1453.441-0.8177.24125.743-2.2891.023.29415.8521.78826.738
1139II_DA139DT140:DA153DT154_JJ0.329-1.4483.8260.281-10.53837.927-0.611-0.4484.072-15.843-0.42239.313
1141II_DA141DT142:DA151DT152_JJ0.236-0.7753.1664.5823.19431.299-1.9780.3763.0765.862-8.40931.782
13II_DC3DA4:DT289DG290_JJ-0.4381.5373.37-1.5679.64933.7350.960.4693.67416.2082.63335.083
19II_DC9DC10:DG283DG284_JJ0.530.7683.375-2.3798.28533.618-0.053-1.2753.41814.0394.03134.675
110II_DC10DA11:DT282DG283_JJ-0.68-0.33.297-1.16310.45129.163-2.5791.0493.03619.9552.2230.962
112II_DC12DC13:DG280DG281_JJ0.101-1.0033.822-1.23319.92332.051-4.388-0.3322.75232.4532.00937.62
113II_DC13DT14:DA279DG280_JJ-0.6730.583.635-2.42915.36827.038-2.3630.713.529.9314.7331.123
116II_DC16DA17:DT276DG277_JJ0.7963.0913.7814.598-14.87146.3574.917-0.6022.785-18.295-5.65748.763
122II_DC22DT23:DA270DG271_JJ-0.009-0.6573.3656.02711.25832.617-2.7920.9242.93819.155-10.25434.964
125II_DC25DC26:DG267DG268_JJ-0.198-0.1293.544-8.1560.68135.212-0.313-0.9383.4991.10813.26236.121
126II_DC26DA27:DT266DG267_JJ-1.2451.7173.4831.661-9.84344.2323.1091.7663.008-12.878-2.17345.289
144II_DC44DT45:DA248DG249_JJ-1.057-0.173.978-18.5315.59232.105-1.231-1.5463.9219.14730.31437.356
147II_DC47DT48:DA245DG246_JJ1.0742.0622.9525.4310.27140.6822.914-0.9863.0770.388-7.7741.028
149II_DC49DC50:DG243DG244_JJ-0.1790.1753.093-0.8640.73838.2810.180.173.0991.1251.31838.298
150II_DC50DA51:DT242DG243_JJ-0.138-0.3893.04-3.72814.83628.873-3.039-0.3442.54327.4556.932.599
153II_DC53DA54:DT239DG240_JJ0.030.0433.796.68112.74226.275-3.0031.563.36425.723-13.48729.895
160II_DC60DA61:DT232DG233_JJ0.3650.4813.2256.4221.50134.8060.5710.3433.2562.481-10.61835.406
166II_DC66DA67:DT226DG227_JJ-0.8011.3983.665-11.93-10.7643.0992.828-0.1193.341-14.07715.60745.862
169II_DC69DT70:DA223DG224_JJ0.0221.0063.17110.008-1.74741.3421.5570.9483.053-2.43-13.92342.519
176II_DC76DA77:DT216DG217_JJ-0.6551.163.245-5.878-7.10944.1192.1410.3383.09-9.3437.72645.026
179II_DC79DT80:DA213DG214_JJ1.2231.553.36810.798-4.92641.9452.591-0.5543.374-6.722-14.73343.519
184II_DC84DA85:DT208DG209_JJ0.0350.3773.1548.02.12933.2280.3161.1653.0963.652-13.72634.215
188II_DC88DC89:DG204DG205_JJ0.1780.993.701-6.857-1.49942.491.515-1.0023.596-2.0529.38543.04
189II_DC89DT90:DA203DG204_JJ-0.8481.2893.129-0.932-15.45337.493.4051.1342.452-22.8861.3840.454
1101II_DC101DA102:DT191DG192_JJ1.361.0273.53710.7435.05736.9250.829-0.5213.8737.742-16.44738.724
1107II_DC107DC108:DG185DG186_JJ-1.5871.633.1791.039-8.96130.5694.4353.0632.557-16.549-1.91931.842
1108II_DC108DA109:DT184DG185_JJ0.6681.7843.4341.255-3.17144.6982.638-0.7583.323-4.162-1.64844.821
1114II_DC114DA115:DT178DG179_JJ-0.2950.1113.2634.8787.8635.61-0.8931.1313.1512.591-7.81436.754
1116II_DC116DT117:DA176DG177_JJ-0.684-0.5613.3117.877-6.92334.860.0742.2043.138-11.245-12.79536.357
1129II_DC129DT130:DA163DG164_JJ-1.2261.4732.61210.273-14.98942.5492.7672.1741.704-19.619-13.44646.101
1132II_DC132DA133:DT160DG161_JJ1.2140.6883.5817.69623.330.526-2.411-0.6833.46137.564-12.40738.982
115II_DG15DC16:DG277DC278_JJ-0.5521.0652.229-1.788-2.47734.0932.0740.7492.174-4.2143.04234.225
118II_DG18DA19:DT274DC275_JJ-0.166-0.0433.3975.371-2.79936.5310.3221.013.334-4.428-8.49637.013
131II_DG31DT32:DA261DC262_JJ-0.162-0.9243.6835.094.16228.261-2.8571.5613.4338.38-10.24929.0
133II_DG33DT34:DA259DC260_JJ0.357-1.1653.837-2.1631.22830.487-2.491-1.1733.7552.334.10430.586
139II_DG39DG40:DC253DC254_JJ-0.7420.5082.964-6.1029.62237.19-0.3440.4143.07714.679.30338.837
140II_DG40DA41:DT252DC253_JJ0.1560.253.0352.431.13435.8180.2540.073.0451.841-3.94435.915
146II_DG46DC47:DG246DC247_JJ-0.3870.0493.3621.722-5.30835.4440.8580.8813.299-8.652-2.80735.867
158II_DG58DG59:DC234DC235_JJ0.6820.6063.3593.795-0.49937.7160.999-0.5473.401-0.77-5.85237.903
159II_DG59DC60:DG233DC234_JJ-0.7240.0613.344-6.843-0.45236.9870.1560.1953.418-0.70510.67337.595
163II_DG63DT64:DA229DC230_JJ-0.803-0.9713.3384.8258.30431.023-3.1492.2572.83615.079-8.76132.441
168II_DG68DC69:DG224DC225_JJ-0.9340.783.41-0.916-5.75837.8861.9311.3053.282-8.8051.438.315
171II_DG71DA72:DT221DC222_JJ-1.019-0.233.3953.4755.86331.286-1.4922.4873.17210.712-6.3532.001
178II_DG78DC79:DG214DC215_JJ-0.6681.0283.9384.128-7.56337.7762.6311.5983.584-11.499-6.27638.711
181II_DG81DA82:DT211DC212_JJ-0.923-0.0013.5792.3197.19231.799-1.3542.0783.42312.9-4.1632.662
187II_DG87DC88:DG205DC206_JJ-1.7770.8123.456-3.069-11.07839.6522.4042.1783.247-15.934.41241.22
194II_DG94DA95:DT198DC199_JJ-0.3920.0213.851-1.3153.9233.755-0.7020.4233.8416.7192.25434.0
197II_DG97DG98:DC195DC196_JJ0.4290.4273.2158.4997.72430.241-0.6280.7643.22514.178-15.60132.3
198II_DG98DA99:DT194DC195_JJ-1.5741.5233.09-10.297-9.30145.3032.6221.1633.009-11.75313.01347.273
1100II_DG100DC101:DG192DC193_JJ-1.1690.8023.134-5.657-5.8637.531.9281.0963.116-8.9798.66838.373
1103II_DG103DT104:DA189DC190_JJ0.035-0.9773.4576.15211.39528.578-3.9731.1032.8221.729-11.73131.32
1121II_DG121DG122:DC171DC172_JJ0.1110.9532.982-1.525-1.0339.5431.517-0.3262.952-1.5222.25239.584
1122II_DG122DT123:DA170DC171_JJ-0.004-0.4533.0594.6810.21232.719-2.2120.6712.77217.497-8.01934.543
1125II_DG125DA126:DT167DC168_JJ-0.522-0.543.4340.8933.55539.072-1.2450.8883.3615.301-1.33139.236
1131II_DG131DC132:DG161DC162_JJ0.0241.633.789-16.234-6.99244.5042.646-1.4933.312-8.83120.50247.719
1134II_DG134DG135:DC158DC159_JJ0.323-0.353.104-8.6528.8629.746-2.095-2.0122.69616.39416.00832.167
1135II_DG135DT136:DA157DC158_JJ-0.291-0.5753.5794.015.95935.069-1.8591.0953.3869.763-6.5735.775
1137II_DG137DG138:DC155DC156_JJ-0.2-0.3453.4994.2375.9832.047-1.6941.123.3310.659-7.55232.853
1138II_DG138DA139:DT154DC155_JJ-0.6570.582.88-9.690.21738.1230.839-0.0682.9570.32614.54939.292
1144II_DG144DA145:DT148DC149_JJ-0.3730.23.145-5.94711.85338.2-1.022-0.1183.09317.4818.77140.355
12II_DT2DC3:DG290DA291_JJ0.7650.3562.96315.517-6.19438.3071.120.4752.957-8.938-22.39341.666
16II_DT6DA7:DT286DA287_JJ-0.2780.1473.4743.0113.40331.896-0.3791.073.4316.154-5.44532.21
18II_DT8DC9:DG284DA285_JJ0.768-0.3043.5424.287-2.70340.771-0.11-0.5843.613-3.862-6.12541.071
114II_DT14DG15:DC278DA279_JJ0.1562.6033.1843.789-9.26345.7173.9770.0892.641-11.757-4.80946.742
120II_DT20DT21:DA272DA273_JJ0.985-0.2253.5181.597-4.24937.9550.237-1.2873.559-6.504-2.44538.215
121II_DT21DC22:DG271DA272_JJ0.201-0.3073.381-5.6354.77438.805-1.03-0.9783.2637.1068.38939.475
123II_DT23DA24:DT269DA270_JJ-0.3290.5653.0842.5962.83537.630.5260.8233.0894.38-4.01237.819
132II_DT32DG33:DC260DA261_JJ0.2690.053.161-2.53911.95934.244-1.54-0.7762.98619.5534.15236.3
134II_DT34DA35:DT258DA259_JJ-0.544-0.1913.0075.389-4.5240.6750.1731.3022.919-6.444-7.68341.253
136II_DT36DT37:DA256DA257_JJ0.332-0.3943.5622.032-7.48231.840.728-0.2013.574-13.391-3.63732.746
137II_DT37DT38:DA255DA256_JJ-0.5020.8133.1639.998-5.81342.2731.611.5672.848-7.885-13.56143.756
138II_DT38DG39:DC254DA255_JJ1.7842.2073.088-0.497-5.09934.3624.394-3.0562.717-8.5720.83534.73
145II_DT45DG46:DC247DA248_JJ1.0771.7813.08715.609-5.07844.1682.643-0.0973.069-6.493-19.95846.976
148II_DT48DC49:DG244DA245_JJ-0.6560.173.935-7.3487.97135.908-1.022-0.1653.93712.5811.59737.457
152II_DT52DC53:DG240DA241_JJ0.680.2663.7051.886.30529.548-0.955-0.8663.71512.172-3.6330.256
162II_DT62DG63:DC230DA231_JJ0.2711.3283.494-6.28612.50434.7170.202-1.3653.64219.9810.04437.351
164II_DT64DT65:DA228DA229_JJ-0.0480.1042.986-3.9245.73733.237-0.665-0.4942.9499.8956.76833.936
165II_DT65DC66:DG227DA228_JJ0.8420.0632.9727.9987.20133.21-0.925-0.2613.03612.207-13.55834.864
170II_DT70DG71:DC222DA223_JJ1.2290.293.112-17.66312.00132.643-0.859-3.7532.17319.02828.00538.848
174II_DT74DT75:DA218DA219_JJ0.3040.0423.3344.3317.63534.614-1.0680.1493.28212.583-7.13935.676
175II_DT75DC76:DG217DA218_JJ-0.5090.083.459-0.7829.79328.677-1.9560.8073.31819.0781.52430.279
180II_DT80DG81:DC212DA213_JJ-0.3310.7283.547-4.6039.88534.541-0.391-0.1953.62616.1577.52336.171
186II_DT86DG87:DC206DA207_JJ1.3441.133.8132.6536.48832.6520.659-1.8054.05111.376-4.65133.376
190II_DT90DT91:DA202DA203_JJ-0.307-0.5043.237-3.32110.6631.758-2.5670.0032.93718.775.84733.615
191II_DT91DT92:DA201DA202_JJ0.3730.6533.6760.5087.23233.127-0.214-0.5473.73612.498-0.87733.889
192II_DT92DT93:DA200DA201_JJ0.0110.1253.281-3.9348.50829.664-1.414-0.7823.16716.1197.45331.078
193II_DT93DG94:DC199DA200_JJ0.586-0.1553.15.43118.31427.318-3.208-0.1542.5734.008-10.08433.23
196II_DT96DG97:DC196DA197_JJ0.3070.4033.4371.2758.86538.308-0.527-0.2943.45113.288-1.91139.303
1104II_DT104DT105:DA188DA189_JJ0.347-0.4123.311-0.4183.66433.634-1.302-0.6653.2456.3080.71933.83
1105II_DT105DT106:DA187DA188_JJ0.345-0.2843.412.2613.00536.127-2.112-0.2333.14320.161-3.50438.388
1106II_DT106DC107:DG186DA187_JJ1.6020.6943.4056.5221.49238.8540.838-1.5383.642.223-9.71739.404
1112II_DT112DA113:DT180DA181_JJ0.12-0.682.9760.7856.21632.921-2.093-0.0932.80610.845-1.3733.495
1117II_DT117DT118:DA175DA176_JJ0.124-0.1293.6041.7441.27340.783-0.3390.0343.6011.825-2.50140.838
1118II_DT118DT119:DA174DA175_JJ-0.6390.2113.558-0.09-12.95133.6292.3351.0213.261-21.4230.14935.97
1119II_DT119DT120:DA173DA174_JJ0.7490.8833.354-1.091-26.7940.8273.062-0.9922.364-34.3181.39748.527
1120II_DT120DG121:DC172DA173_JJ0.3721.0113.411.9526.79439.1610.6420.863.4859.778-17.241.414
1123II_DT123DA124:DT169DA170_JJ0.1190.8593.767-0.10512.06431.854-0.847-0.2233.83221.060.18334.006
1128II_DT128DC129:DG164DA165_JJ0.231-0.7573.608-10.9131.51233.16-1.512-2.1873.3322.56218.49734.893
1130II_DT130DG131:DC162DA163_JJ0.871.7713.33212.5815.93136.691.8570.3713.6599.033-19.16239.153
1136II_DT136DG137:DC156DA157_JJ1.2130.7373.1525.2325.88533.4880.317-1.2263.37410.041-8.92834.375
1140II_DT140DA141:DT152DA153_JJ-0.4720.4893.064.6463.59236.1890.3171.3453.0115.736-7.41936.647
1142II_DT142DT143:DA150DA151_JJ0.390.5532.8330.6178.87432.728-0.322-0.5812.88715.398-1.07133.883
1143II_DT143DG144:DC149DA150_JJ-0.704-0.1463.1320.43319.65431.256-2.7781.1722.5932.739-0.72136.794

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.