A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
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NDB ID: NA2360  PDB ID: 3W97 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11I_DA1:DT292_J0.269-0.187-1.001-23.55812.498-6.309
14I_DA4:DT289_J0.07-0.103-0.476-3.318-15.3066.479
15I_DA5:DT288_J0.157-0.117-0.771-5.883-25.5065.053
17I_DA7:DT286_J0.062-0.2020.1411.454-18.8611.627
111I_DA11:DT282_J0.07-0.02-0.28110.7524.688-10.349
117I_DA17:DT276_J0.0890.0920.2610.544-1.372-0.87
119I_DA19:DT274_J0.247-0.07-0.1849.444-30.0543.811
124I_DA24:DT269_J0.029-0.108-0.088-1.66-14.786-5.734
127I_DA27:DT266_J0.136-0.0390.415-4.629-21.285-9.344
128I_DA28:DT265_J-0.074-0.0770.1637.649-1.549-1.676
129I_DA29:DT264_J0.3090.164-0.166-4.64-11.913-11.044
130I_DA30:DT263_J0.04-0.150.14211.998-22.2575.169
135I_DA35:DT258_J-0.036-0.035-0.077-9.641-1.985-2.167
141I_DA41:DT252_J0.055-0.071-0.326-3.869-12.56-3.744
142I_DA42:DT251_J-0.0560.032-0.802-23.862-4.744-6.236
143I_DA43:DT250_J0.046-0.270.42-14.92-0.9736.694
151I_DA51:DT242_J-0.0820.008-0.164-18.163-2.0761.021
154I_DA54:DT239_J0.032-0.171-0.759-10.868-3.252.952
155I_DA55:DT238_J-0.124-0.23-0.808-10.839-4.848-2.479
156I_DA56:DT237_J0.227-0.1120.0810.618-29.517-8.476
157I_DA57:DT236_J0.083-0.033-0.205-0.986-23.7431.89
161I_DA61:DT232_J0.248-0.1220.096-8.316-9.3291.85
167I_DA67:DT226_J0.092-0.2010.4616.287-22.99-11.03
172I_DA72:DT221_J-0.038-0.0340.0377.092-4.744-1.499
173I_DA73:DT220_J0.127-0.205-0.265-0.505-9.444-1.533
177I_DA77:DT216_J0.160.268-0.5222.976-18.489-12.608
182I_DA82:DT211_J-0.023-0.143-0.6120.191-3.855-0.805
183I_DA83:DT210_J-0.037-0.294-0.958-5.103-15.5764.321
185I_DA85:DT208_J-0.026-0.1340.473-8.479-9.3128.328
195I_DA95:DT198_J0.1330.077-0.932-29.7822.963-2.64
199I_DA99:DT194_J0.1060.128-0.136-7.281-32.971-8.964
1102I_DA102:DT191_J0.0770.003-0.5655.302-10.8977.446
1109I_DA109:DT184_J0.033-0.065-0.245-1.14-7.8560.495
1110I_DA110:DT183_J-0.001-0.044-0.5344.556-2.896-5.616
1111I_DA111:DT182_J0.09-0.081-0.221-3.575-3.6398.076
1113I_DA113:DT180_J0.162-0.1860.7253.723-11.0152.878
1115I_DA115:DT178_J0.246-0.0130.0818.409-11.126-4.745
1124I_DA124:DT169_J-0.019-0.148-0.36314.507-19.6712.233
1126I_DA126:DT167_J-0.0830.004-0.351-9.806-18.5711.206
1127I_DA127:DT166_J0.1940.094-0.496-14.152-23.4052.802
1133I_DA133:DT160_J0.160.046-0.286-8.085-18.0938.96
1139I_DA139:DT154_J-0.021-0.2430.555.4-23.264-3.032
1141I_DA141:DT152_J0.0730.111-0.2070.688-27.45-4.684
1145I_DA145:DT148_J0.1620.162-0.203-9.523-15.408-7.507
13I_DC3:DG290_J0.083-0.137-0.818-5.614-4.0064.257
19I_DC9:DG284_J0.0580.082-0.175-4.135-17.9093.486
110I_DC10:DG283_J0.2820.043-0.4468.009-12.8095.647
112I_DC12:DG281_J0.083-0.001-0.48713.176-2.404-4.235
113I_DC13:DG280_J-0.050.0910.562-28.948-9.8543.555
116I_DC16:DG277_J0.4630.049-0.1422.167-11.46-3.254
122I_DC22:DG271_J0.231-0.0580.2222.459-12.512-3.065
125I_DC25:DG268_J-0.050.0830.446-4.933-1.207-1.906
126I_DC26:DG267_J0.141-0.1620.409-5.8745.747-2.018
144I_DC44:DG249_J0.298-0.116-0.9265.258-28.85919.195
147I_DC47:DG246_J-0.04-0.1240.359-8.204-35.6312.705
149I_DC49:DG244_J0.0870.110.562-17.814-6.604-0.906
150I_DC50:DG243_J-0.096-0.159-0.575-3.84-21.7193.819
153I_DC53:DG240_J0.436-0.047-0.82915.043-17.5875.195
160I_DC60:DG233_J-0.0490.0630.465-5.1813.241-1.246
166I_DC66:DG227_J-0.1820.061-1.19218.35-9.3173.864
169I_DC69:DG224_J-0.05-0.0280.07915.192-19.393-6.39
176I_DC76:DG217_J-0.0780.028-0.47512.068-5.012-2.251
179I_DC79:DG214_J0.003-0.158-0.3483.445-29.7471.921
184I_DC84:DG209_J0.02-0.091-0.7084.345-17.5136.683
188I_DC88:DG205_J-0.199-0.0630.975-19.502-10.33-3.398
189I_DC89:DG204_J-0.057-0.0361.074-23.4442.009-1.742
1101I_DC101:DG192_J0.060.050.492.148-14.324-1.692
1107I_DC107:DG186_J-0.028-0.295-1.125-3.306-7.0464.405
1108I_DC108:DG185_J-0.086-0.0590.5621.586-27.567-7.109
1114I_DC114:DG179_J0.0120.0670.26811.968-14.483-5.24
1116I_DC116:DG177_J-0.1190.0180.4536.995-1.2042.289
1129I_DC129:DG164_J0.008-0.1441.065-3.9795.623.371
1132I_DC132:DG161_J0.133-0.1860.117-3.41-17.435-3.363
115I_DG15:DC278_J-0.2630.159-0.053-2.345-13.8121.029
118I_DG18:DC275_J-0.259-0.016-0.0866.128-12.0885.596
131I_DG31:DC262_J-0.244-0.1620.6526.956-4.8061.495
133I_DG33:DC260_J-0.077-0.0420.0730.324-10.391.726
139I_DG39:DC254_J-0.1540.0920.1942.2243.815-0.114
140I_DG40:DC253_J0.1060.1170.396-3.201-21.844-5.498
146I_DG46:DC247_J-0.5360.046-0.755-21.16-19.78911.134
158I_DG58:DC235_J-0.271-0.047-0.097-10.36-16.969-0.442
159I_DG59:DC234_J-0.3310.0130.168-13.881-16.7652.121
163I_DG63:DC230_J0.194-0.058-0.696-22.587-25.4861.574
168I_DG68:DC225_J-0.308-0.36-0.918.5144.741-1.132
171I_DG71:DC222_J-0.0680.0030.88711.8633.997.68
178I_DG78:DC215_J-0.129-0.047-0.4231.782-10.658.156
181I_DG81:DC212_J-0.0420.1570.54317.8783.1593.044
187I_DG87:DC206_J-0.191-0.048-0.743-0.323-3.1723.96
194I_DG94:DC199_J-0.0380.065-1.197-36.217-3.843-3.94
197I_DG97:DC196_J-0.1140.0580.81714.429-7.145-0.072
198I_DG98:DC195_J-0.050.066-0.2948.722-12.7084.954
1100I_DG100:DC193_J-0.179-0.120.79410.75217.8711.04
1103I_DG103:DC190_J0.1070.1350.138-2.936-1.086-0.383
1121I_DG121:DC172_J-0.020.082-0.408-1.548-18.070.295
1122I_DG122:DC171_J0.0010.0890.35115.62-11.578-0.149
1125I_DG125:DC168_J-0.080.007-0.685-5.552-16.1452.568
1131I_DG131:DC162_J-0.49-0.232-0.959-13.886-27.0510.049
1134I_DG134:DC159_J-0.083-0.115-0.696-10.119-3.862-1.44
1135I_DG135:DC158_J-0.057-0.0260.347-13.569-0.6231.883
1137I_DG137:DC156_J-0.33-0.001-0.657-6.608-18.4597.985
1138I_DG138:DC155_J-0.147-0.02-0.927-16.586-8.638-0.158
1144I_DG144:DC149_J-0.151-0.116-0.5394.491-16.9283.309
12I_DT2:DA291_J-0.055-0.138-0.894-3.681-1.171-4.059
16I_DT6:DA287_J0.105-0.323-0.5149.871-7.354-0.095
18I_DT8:DA285_J-0.1320.029-0.121-12.708-21.654-1.257
114I_DT14:DA279_J-0.030.0710.158-14.991-28.63-1.542
120I_DT20:DA273_J-0.107-0.032-0.3863.674-24.361-0.137
121I_DT21:DA272_J-0.154-0.044-0.075-5.837-13.747-2.142
123I_DT23:DA270_J0.0870.0980.053-10.387-1.348-4.604
132I_DT32:DA261_J-0.007-0.1520.2847.85811.2351.508
134I_DT34:DA259_J0.112-0.076-0.4299.949-19.0523.058
136I_DT36:DA257_J-0.406-0.0960.702-5.189-6.862-2.515
137I_DT37:DA256_J-0.15-0.2010.7267.46-8.938-3.705
138I_DT38:DA255_J-0.179-0.026-0.002-6.768-24.198-6.91
145I_DT45:DA248_J-0.150.0250.46-9.232-16.431-8.905
148I_DT48:DA245_J-0.123-0.02-0.309-5.583-16.2630.931
152I_DT52:DA241_J-0.2630.0250.109-2.86-25.037-18.524
162I_DT62:DA231_J-0.254-0.0330.12-7.933-15.376-5.609
164I_DT64:DA229_J-0.027-0.178-1.243-14.029-37.6841.976
165I_DT65:DA228_J0.083-0.037-0.283-2.813-11.32-2.813
170I_DT70:DA223_J0.058-0.159-0.75211.2685.184-2.153
174I_DT74:DA219_J-0.2640.04-0.0535.846-4.719-1.968
175I_DT75:DA218_J-0.259-0.028-0.10811.441-8.8252.981
180I_DT80:DA213_J-0.172-0.159-0.6298.3423.0050.431
186I_DT86:DA207_J-0.105-0.016-0.0711.529-3.2352.525
190I_DT90:DA203_J-0.243-0.0220.099-7.835-10.073-4.517
191I_DT91:DA202_J0.025-0.08-0.55-4.06-16.013.02
192I_DT92:DA201_J0.123-0.175-0.353-1.045-11.9897.466
193I_DT93:DA200_J0.224-0.3140.444-0.4484.9734.533
196I_DT96:DA197_J0.089-0.0810.64412.016-2.6530.081
1104I_DT104:DA189_J-0.0490.0060.182.413-3.669-1.972
1105I_DT105:DA188_J-0.081-0.172-0.305-12.436-9.6363.774
1106I_DT106:DA187_J0.081-0.322-0.551-10.674-20.2034.115
1112I_DT112:DA181_J-0.352-0.1020.754-0.698-1.784-0.514
1117I_DT117:DA176_J-0.189-0.0380.333-11.355-8.9210.227
1118I_DT118:DA175_J-0.07-0.1830.945-33.474-4.1890.793
1119I_DT119:DA174_J-0.393-0.1440.852-18.032-12.3492.654
1120I_DT120:DA173_J-0.1580.0240.592-8.929-20.379-0.534
1123I_DT123:DA170_J-0.094-0.08-0.13418.085-5.974-1.495
1128I_DT128:DA165_J-0.194-0.1880.643-2.799-15.7634.032
1130I_DT130:DA163_J-0.3460.0960.0317.836-17.546-6.132
1136I_DT136:DA157_J-0.0540.117-0.3968.365-6.535-8.237
1140I_DT140:DA153_J-0.065-0.0090.2936.687-16.296-6.209
1142I_DT142:DA151_J-0.070.00.4332.844-18.2691.356
1143I_DT143:DA150_J0.2450.024-0.49515.116-22.7893.256
1146I_DT146:DA147_J-0.430.1110.2449.25-10.35-18.75

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.