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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
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NDB ID:
NA2360
PDB ID:
3W97
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
1
I_DA1:DT292_J
0.269
-0.187
-1.001
-23.558
12.498
-6.309
1
4
I_DA4:DT289_J
0.07
-0.103
-0.476
-3.318
-15.306
6.479
1
5
I_DA5:DT288_J
0.157
-0.117
-0.771
-5.883
-25.506
5.053
1
7
I_DA7:DT286_J
0.062
-0.202
0.141
1.454
-18.861
1.627
1
11
I_DA11:DT282_J
0.07
-0.02
-0.281
10.752
4.688
-10.349
1
17
I_DA17:DT276_J
0.089
0.092
0.261
0.544
-1.372
-0.87
1
19
I_DA19:DT274_J
0.247
-0.07
-0.184
9.444
-30.054
3.811
1
24
I_DA24:DT269_J
0.029
-0.108
-0.088
-1.66
-14.786
-5.734
1
27
I_DA27:DT266_J
0.136
-0.039
0.415
-4.629
-21.285
-9.344
1
28
I_DA28:DT265_J
-0.074
-0.077
0.163
7.649
-1.549
-1.676
1
29
I_DA29:DT264_J
0.309
0.164
-0.166
-4.64
-11.913
-11.044
1
30
I_DA30:DT263_J
0.04
-0.15
0.142
11.998
-22.257
5.169
1
35
I_DA35:DT258_J
-0.036
-0.035
-0.077
-9.641
-1.985
-2.167
1
41
I_DA41:DT252_J
0.055
-0.071
-0.326
-3.869
-12.56
-3.744
1
42
I_DA42:DT251_J
-0.056
0.032
-0.802
-23.862
-4.744
-6.236
1
43
I_DA43:DT250_J
0.046
-0.27
0.42
-14.92
-0.973
6.694
1
51
I_DA51:DT242_J
-0.082
0.008
-0.164
-18.163
-2.076
1.021
1
54
I_DA54:DT239_J
0.032
-0.171
-0.759
-10.868
-3.25
2.952
1
55
I_DA55:DT238_J
-0.124
-0.23
-0.808
-10.839
-4.848
-2.479
1
56
I_DA56:DT237_J
0.227
-0.112
0.08
10.618
-29.517
-8.476
1
57
I_DA57:DT236_J
0.083
-0.033
-0.205
-0.986
-23.743
1.89
1
61
I_DA61:DT232_J
0.248
-0.122
0.096
-8.316
-9.329
1.85
1
67
I_DA67:DT226_J
0.092
-0.201
0.461
6.287
-22.99
-11.03
1
72
I_DA72:DT221_J
-0.038
-0.034
0.037
7.092
-4.744
-1.499
1
73
I_DA73:DT220_J
0.127
-0.205
-0.265
-0.505
-9.444
-1.533
1
77
I_DA77:DT216_J
0.16
0.268
-0.522
2.976
-18.489
-12.608
1
82
I_DA82:DT211_J
-0.023
-0.143
-0.612
0.191
-3.855
-0.805
1
83
I_DA83:DT210_J
-0.037
-0.294
-0.958
-5.103
-15.576
4.321
1
85
I_DA85:DT208_J
-0.026
-0.134
0.473
-8.479
-9.312
8.328
1
95
I_DA95:DT198_J
0.133
0.077
-0.932
-29.782
2.963
-2.64
1
99
I_DA99:DT194_J
0.106
0.128
-0.136
-7.281
-32.971
-8.964
1
102
I_DA102:DT191_J
0.077
0.003
-0.565
5.302
-10.897
7.446
1
109
I_DA109:DT184_J
0.033
-0.065
-0.245
-1.14
-7.856
0.495
1
110
I_DA110:DT183_J
-0.001
-0.044
-0.534
4.556
-2.896
-5.616
1
111
I_DA111:DT182_J
0.09
-0.081
-0.221
-3.575
-3.639
8.076
1
113
I_DA113:DT180_J
0.162
-0.186
0.725
3.723
-11.015
2.878
1
115
I_DA115:DT178_J
0.246
-0.013
0.08
18.409
-11.126
-4.745
1
124
I_DA124:DT169_J
-0.019
-0.148
-0.363
14.507
-19.671
2.233
1
126
I_DA126:DT167_J
-0.083
0.004
-0.351
-9.806
-18.571
1.206
1
127
I_DA127:DT166_J
0.194
0.094
-0.496
-14.152
-23.405
2.802
1
133
I_DA133:DT160_J
0.16
0.046
-0.286
-8.085
-18.093
8.96
1
139
I_DA139:DT154_J
-0.021
-0.243
0.55
5.4
-23.264
-3.032
1
141
I_DA141:DT152_J
0.073
0.111
-0.207
0.688
-27.45
-4.684
1
145
I_DA145:DT148_J
0.162
0.162
-0.203
-9.523
-15.408
-7.507
1
3
I_DC3:DG290_J
0.083
-0.137
-0.818
-5.614
-4.006
4.257
1
9
I_DC9:DG284_J
0.058
0.082
-0.175
-4.135
-17.909
3.486
1
10
I_DC10:DG283_J
0.282
0.043
-0.446
8.009
-12.809
5.647
1
12
I_DC12:DG281_J
0.083
-0.001
-0.487
13.176
-2.404
-4.235
1
13
I_DC13:DG280_J
-0.05
0.091
0.562
-28.948
-9.854
3.555
1
16
I_DC16:DG277_J
0.463
0.049
-0.14
22.167
-11.46
-3.254
1
22
I_DC22:DG271_J
0.231
-0.058
0.222
2.459
-12.512
-3.065
1
25
I_DC25:DG268_J
-0.05
0.083
0.446
-4.933
-1.207
-1.906
1
26
I_DC26:DG267_J
0.141
-0.162
0.409
-5.874
5.747
-2.018
1
44
I_DC44:DG249_J
0.298
-0.116
-0.926
5.258
-28.859
19.195
1
47
I_DC47:DG246_J
-0.04
-0.124
0.359
-8.204
-35.631
2.705
1
49
I_DC49:DG244_J
0.087
0.11
0.562
-17.814
-6.604
-0.906
1
50
I_DC50:DG243_J
-0.096
-0.159
-0.575
-3.84
-21.719
3.819
1
53
I_DC53:DG240_J
0.436
-0.047
-0.829
15.043
-17.587
5.195
1
60
I_DC60:DG233_J
-0.049
0.063
0.465
-5.181
3.241
-1.246
1
66
I_DC66:DG227_J
-0.182
0.061
-1.192
18.35
-9.317
3.864
1
69
I_DC69:DG224_J
-0.05
-0.028
0.079
15.192
-19.393
-6.39
1
76
I_DC76:DG217_J
-0.078
0.028
-0.475
12.068
-5.012
-2.251
1
79
I_DC79:DG214_J
0.003
-0.158
-0.348
3.445
-29.747
1.921
1
84
I_DC84:DG209_J
0.02
-0.091
-0.708
4.345
-17.513
6.683
1
88
I_DC88:DG205_J
-0.199
-0.063
0.975
-19.502
-10.33
-3.398
1
89
I_DC89:DG204_J
-0.057
-0.036
1.074
-23.444
2.009
-1.742
1
101
I_DC101:DG192_J
0.06
0.05
0.49
2.148
-14.324
-1.692
1
107
I_DC107:DG186_J
-0.028
-0.295
-1.125
-3.306
-7.046
4.405
1
108
I_DC108:DG185_J
-0.086
-0.059
0.562
1.586
-27.567
-7.109
1
114
I_DC114:DG179_J
0.012
0.067
0.268
11.968
-14.483
-5.24
1
116
I_DC116:DG177_J
-0.119
0.018
0.453
6.995
-1.204
2.289
1
129
I_DC129:DG164_J
0.008
-0.144
1.065
-3.979
5.62
3.371
1
132
I_DC132:DG161_J
0.133
-0.186
0.117
-3.41
-17.435
-3.363
1
15
I_DG15:DC278_J
-0.263
0.159
-0.053
-2.345
-13.812
1.029
1
18
I_DG18:DC275_J
-0.259
-0.016
-0.086
6.128
-12.088
5.596
1
31
I_DG31:DC262_J
-0.244
-0.162
0.652
6.956
-4.806
1.495
1
33
I_DG33:DC260_J
-0.077
-0.042
0.073
0.324
-10.39
1.726
1
39
I_DG39:DC254_J
-0.154
0.092
0.194
2.224
3.815
-0.114
1
40
I_DG40:DC253_J
0.106
0.117
0.396
-3.201
-21.844
-5.498
1
46
I_DG46:DC247_J
-0.536
0.046
-0.755
-21.16
-19.789
11.134
1
58
I_DG58:DC235_J
-0.271
-0.047
-0.097
-10.36
-16.969
-0.442
1
59
I_DG59:DC234_J
-0.331
0.013
0.168
-13.881
-16.765
2.121
1
63
I_DG63:DC230_J
0.194
-0.058
-0.696
-22.587
-25.486
1.574
1
68
I_DG68:DC225_J
-0.308
-0.36
-0.91
8.514
4.741
-1.132
1
71
I_DG71:DC222_J
-0.068
0.003
0.887
11.863
3.99
7.68
1
78
I_DG78:DC215_J
-0.129
-0.047
-0.423
1.782
-10.65
8.156
1
81
I_DG81:DC212_J
-0.042
0.157
0.543
17.878
3.159
3.044
1
87
I_DG87:DC206_J
-0.191
-0.048
-0.743
-0.323
-3.172
3.96
1
94
I_DG94:DC199_J
-0.038
0.065
-1.197
-36.217
-3.843
-3.94
1
97
I_DG97:DC196_J
-0.114
0.058
0.817
14.429
-7.145
-0.072
1
98
I_DG98:DC195_J
-0.05
0.066
-0.294
8.722
-12.708
4.954
1
100
I_DG100:DC193_J
-0.179
-0.12
0.794
10.752
17.87
11.04
1
103
I_DG103:DC190_J
0.107
0.135
0.138
-2.936
-1.086
-0.383
1
121
I_DG121:DC172_J
-0.02
0.082
-0.408
-1.548
-18.07
0.295
1
122
I_DG122:DC171_J
0.001
0.089
0.351
15.62
-11.578
-0.149
1
125
I_DG125:DC168_J
-0.08
0.007
-0.685
-5.552
-16.145
2.568
1
131
I_DG131:DC162_J
-0.49
-0.232
-0.959
-13.886
-27.05
10.049
1
134
I_DG134:DC159_J
-0.083
-0.115
-0.696
-10.119
-3.862
-1.44
1
135
I_DG135:DC158_J
-0.057
-0.026
0.347
-13.569
-0.623
1.883
1
137
I_DG137:DC156_J
-0.33
-0.001
-0.657
-6.608
-18.459
7.985
1
138
I_DG138:DC155_J
-0.147
-0.02
-0.927
-16.586
-8.638
-0.158
1
144
I_DG144:DC149_J
-0.151
-0.116
-0.539
4.491
-16.928
3.309
1
2
I_DT2:DA291_J
-0.055
-0.138
-0.894
-3.681
-1.171
-4.059
1
6
I_DT6:DA287_J
0.105
-0.323
-0.514
9.871
-7.354
-0.095
1
8
I_DT8:DA285_J
-0.132
0.029
-0.121
-12.708
-21.654
-1.257
1
14
I_DT14:DA279_J
-0.03
0.071
0.158
-14.991
-28.63
-1.542
1
20
I_DT20:DA273_J
-0.107
-0.032
-0.386
3.674
-24.361
-0.137
1
21
I_DT21:DA272_J
-0.154
-0.044
-0.075
-5.837
-13.747
-2.142
1
23
I_DT23:DA270_J
0.087
0.098
0.053
-10.387
-1.348
-4.604
1
32
I_DT32:DA261_J
-0.007
-0.152
0.284
7.858
11.235
1.508
1
34
I_DT34:DA259_J
0.112
-0.076
-0.429
9.949
-19.052
3.058
1
36
I_DT36:DA257_J
-0.406
-0.096
0.702
-5.189
-6.862
-2.515
1
37
I_DT37:DA256_J
-0.15
-0.201
0.726
7.46
-8.938
-3.705
1
38
I_DT38:DA255_J
-0.179
-0.026
-0.002
-6.768
-24.198
-6.91
1
45
I_DT45:DA248_J
-0.15
0.025
0.46
-9.232
-16.431
-8.905
1
48
I_DT48:DA245_J
-0.123
-0.02
-0.309
-5.583
-16.263
0.931
1
52
I_DT52:DA241_J
-0.263
0.025
0.109
-2.86
-25.037
-18.524
1
62
I_DT62:DA231_J
-0.254
-0.033
0.12
-7.933
-15.376
-5.609
1
64
I_DT64:DA229_J
-0.027
-0.178
-1.243
-14.029
-37.684
1.976
1
65
I_DT65:DA228_J
0.083
-0.037
-0.283
-2.813
-11.32
-2.813
1
70
I_DT70:DA223_J
0.058
-0.159
-0.752
11.268
5.184
-2.153
1
74
I_DT74:DA219_J
-0.264
0.04
-0.053
5.846
-4.719
-1.968
1
75
I_DT75:DA218_J
-0.259
-0.028
-0.108
11.441
-8.825
2.981
1
80
I_DT80:DA213_J
-0.172
-0.159
-0.629
8.342
3.005
0.431
1
86
I_DT86:DA207_J
-0.105
-0.016
-0.071
1.529
-3.235
2.525
1
90
I_DT90:DA203_J
-0.243
-0.022
0.099
-7.835
-10.073
-4.517
1
91
I_DT91:DA202_J
0.025
-0.08
-0.55
-4.06
-16.01
3.02
1
92
I_DT92:DA201_J
0.123
-0.175
-0.353
-1.045
-11.989
7.466
1
93
I_DT93:DA200_J
0.224
-0.314
0.444
-0.448
4.973
4.533
1
96
I_DT96:DA197_J
0.089
-0.081
0.644
12.016
-2.653
0.081
1
104
I_DT104:DA189_J
-0.049
0.006
0.18
2.413
-3.669
-1.972
1
105
I_DT105:DA188_J
-0.081
-0.172
-0.305
-12.436
-9.636
3.774
1
106
I_DT106:DA187_J
0.081
-0.322
-0.551
-10.674
-20.203
4.115
1
112
I_DT112:DA181_J
-0.352
-0.102
0.754
-0.698
-1.784
-0.514
1
117
I_DT117:DA176_J
-0.189
-0.038
0.333
-11.355
-8.921
0.227
1
118
I_DT118:DA175_J
-0.07
-0.183
0.945
-33.474
-4.189
0.793
1
119
I_DT119:DA174_J
-0.393
-0.144
0.852
-18.032
-12.349
2.654
1
120
I_DT120:DA173_J
-0.158
0.024
0.592
-8.929
-20.379
-0.534
1
123
I_DT123:DA170_J
-0.094
-0.08
-0.134
18.085
-5.974
-1.495
1
128
I_DT128:DA165_J
-0.194
-0.188
0.643
-2.799
-15.763
4.032
1
130
I_DT130:DA163_J
-0.346
0.096
0.031
7.836
-17.546
-6.132
1
136
I_DT136:DA157_J
-0.054
0.117
-0.396
8.365
-6.535
-8.237
1
140
I_DT140:DA153_J
-0.065
-0.009
0.293
6.687
-16.296
-6.209
1
142
I_DT142:DA151_J
-0.07
0.0
0.433
2.844
-18.269
1.356
1
143
I_DT143:DA150_J
0.245
0.024
-0.495
15.116
-22.789
3.256
1
146
I_DT146:DA147_J
-0.43
0.111
0.244
9.25
-10.35
-18.75
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.