3W97: Base Pair Morphology Parameters

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As of 11-Dec-2019 number of released structures: 10507

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NDB ID: NA2360 PDB ID: 3W97

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	1	I_DA1:DT292_J	0.269	-0.187	-1.001	-23.558	12.498	-6.309
1	4	I_DA4:DT289_J	0.07	-0.103	-0.476	-3.318	-15.306	6.479
1	5	I_DA5:DT288_J	0.157	-0.117	-0.771	-5.883	-25.506	5.053
1	7	I_DA7:DT286_J	0.062	-0.202	0.141	1.454	-18.861	1.627
1	11	I_DA11:DT282_J	0.07	-0.02	-0.281	10.752	4.688	-10.349
1	17	I_DA17:DT276_J	0.089	0.092	0.261	0.544	-1.372	-0.87
1	19	I_DA19:DT274_J	0.247	-0.07	-0.184	9.444	-30.054	3.811
1	24	I_DA24:DT269_J	0.029	-0.108	-0.088	-1.66	-14.786	-5.734
1	27	I_DA27:DT266_J	0.136	-0.039	0.415	-4.629	-21.285	-9.344
1	28	I_DA28:DT265_J	-0.074	-0.077	0.163	7.649	-1.549	-1.676
1	29	I_DA29:DT264_J	0.309	0.164	-0.166	-4.64	-11.913	-11.044
1	30	I_DA30:DT263_J	0.04	-0.15	0.142	11.998	-22.257	5.169
1	35	I_DA35:DT258_J	-0.036	-0.035	-0.077	-9.641	-1.985	-2.167
1	41	I_DA41:DT252_J	0.055	-0.071	-0.326	-3.869	-12.56	-3.744
1	42	I_DA42:DT251_J	-0.056	0.032	-0.802	-23.862	-4.744	-6.236
1	43	I_DA43:DT250_J	0.046	-0.27	0.42	-14.92	-0.973	6.694
1	51	I_DA51:DT242_J	-0.082	0.008	-0.164	-18.163	-2.076	1.021
1	54	I_DA54:DT239_J	0.032	-0.171	-0.759	-10.868	-3.25	2.952
1	55	I_DA55:DT238_J	-0.124	-0.23	-0.808	-10.839	-4.848	-2.479
1	56	I_DA56:DT237_J	0.227	-0.112	0.08	10.618	-29.517	-8.476
1	57	I_DA57:DT236_J	0.083	-0.033	-0.205	-0.986	-23.743	1.89
1	61	I_DA61:DT232_J	0.248	-0.122	0.096	-8.316	-9.329	1.85
1	67	I_DA67:DT226_J	0.092	-0.201	0.461	6.287	-22.99	-11.03
1	72	I_DA72:DT221_J	-0.038	-0.034	0.037	7.092	-4.744	-1.499
1	73	I_DA73:DT220_J	0.127	-0.205	-0.265	-0.505	-9.444	-1.533
1	77	I_DA77:DT216_J	0.16	0.268	-0.522	2.976	-18.489	-12.608
1	82	I_DA82:DT211_J	-0.023	-0.143	-0.612	0.191	-3.855	-0.805
1	83	I_DA83:DT210_J	-0.037	-0.294	-0.958	-5.103	-15.576	4.321
1	85	I_DA85:DT208_J	-0.026	-0.134	0.473	-8.479	-9.312	8.328
1	95	I_DA95:DT198_J	0.133	0.077	-0.932	-29.782	2.963	-2.64
1	99	I_DA99:DT194_J	0.106	0.128	-0.136	-7.281	-32.971	-8.964
1	102	I_DA102:DT191_J	0.077	0.003	-0.565	5.302	-10.897	7.446
1	109	I_DA109:DT184_J	0.033	-0.065	-0.245	-1.14	-7.856	0.495
1	110	I_DA110:DT183_J	-0.001	-0.044	-0.534	4.556	-2.896	-5.616
1	111	I_DA111:DT182_J	0.09	-0.081	-0.221	-3.575	-3.639	8.076
1	113	I_DA113:DT180_J	0.162	-0.186	0.725	3.723	-11.015	2.878
1	115	I_DA115:DT178_J	0.246	-0.013	0.08	18.409	-11.126	-4.745
1	124	I_DA124:DT169_J	-0.019	-0.148	-0.363	14.507	-19.671	2.233
1	126	I_DA126:DT167_J	-0.083	0.004	-0.351	-9.806	-18.571	1.206
1	127	I_DA127:DT166_J	0.194	0.094	-0.496	-14.152	-23.405	2.802
1	133	I_DA133:DT160_J	0.16	0.046	-0.286	-8.085	-18.093	8.96
1	139	I_DA139:DT154_J	-0.021	-0.243	0.55	5.4	-23.264	-3.032
1	141	I_DA141:DT152_J	0.073	0.111	-0.207	0.688	-27.45	-4.684
1	145	I_DA145:DT148_J	0.162	0.162	-0.203	-9.523	-15.408	-7.507
1	3	I_DC3:DG290_J	0.083	-0.137	-0.818	-5.614	-4.006	4.257
1	9	I_DC9:DG284_J	0.058	0.082	-0.175	-4.135	-17.909	3.486
1	10	I_DC10:DG283_J	0.282	0.043	-0.446	8.009	-12.809	5.647
1	12	I_DC12:DG281_J	0.083	-0.001	-0.487	13.176	-2.404	-4.235
1	13	I_DC13:DG280_J	-0.05	0.091	0.562	-28.948	-9.854	3.555
1	16	I_DC16:DG277_J	0.463	0.049	-0.14	22.167	-11.46	-3.254
1	22	I_DC22:DG271_J	0.231	-0.058	0.222	2.459	-12.512	-3.065
1	25	I_DC25:DG268_J	-0.05	0.083	0.446	-4.933	-1.207	-1.906
1	26	I_DC26:DG267_J	0.141	-0.162	0.409	-5.874	5.747	-2.018
1	44	I_DC44:DG249_J	0.298	-0.116	-0.926	5.258	-28.859	19.195
1	47	I_DC47:DG246_J	-0.04	-0.124	0.359	-8.204	-35.631	2.705
1	49	I_DC49:DG244_J	0.087	0.11	0.562	-17.814	-6.604	-0.906
1	50	I_DC50:DG243_J	-0.096	-0.159	-0.575	-3.84	-21.719	3.819
1	53	I_DC53:DG240_J	0.436	-0.047	-0.829	15.043	-17.587	5.195
1	60	I_DC60:DG233_J	-0.049	0.063	0.465	-5.181	3.241	-1.246
1	66	I_DC66:DG227_J	-0.182	0.061	-1.192	18.35	-9.317	3.864
1	69	I_DC69:DG224_J	-0.05	-0.028	0.079	15.192	-19.393	-6.39
1	76	I_DC76:DG217_J	-0.078	0.028	-0.475	12.068	-5.012	-2.251
1	79	I_DC79:DG214_J	0.003	-0.158	-0.348	3.445	-29.747	1.921
1	84	I_DC84:DG209_J	0.02	-0.091	-0.708	4.345	-17.513	6.683
1	88	I_DC88:DG205_J	-0.199	-0.063	0.975	-19.502	-10.33	-3.398
1	89	I_DC89:DG204_J	-0.057	-0.036	1.074	-23.444	2.009	-1.742
1	101	I_DC101:DG192_J	0.06	0.05	0.49	2.148	-14.324	-1.692
1	107	I_DC107:DG186_J	-0.028	-0.295	-1.125	-3.306	-7.046	4.405
1	108	I_DC108:DG185_J	-0.086	-0.059	0.562	1.586	-27.567	-7.109
1	114	I_DC114:DG179_J	0.012	0.067	0.268	11.968	-14.483	-5.24
1	116	I_DC116:DG177_J	-0.119	0.018	0.453	6.995	-1.204	2.289
1	129	I_DC129:DG164_J	0.008	-0.144	1.065	-3.979	5.62	3.371
1	132	I_DC132:DG161_J	0.133	-0.186	0.117	-3.41	-17.435	-3.363
1	15	I_DG15:DC278_J	-0.263	0.159	-0.053	-2.345	-13.812	1.029
1	18	I_DG18:DC275_J	-0.259	-0.016	-0.086	6.128	-12.088	5.596
1	31	I_DG31:DC262_J	-0.244	-0.162	0.652	6.956	-4.806	1.495
1	33	I_DG33:DC260_J	-0.077	-0.042	0.073	0.324	-10.39	1.726
1	39	I_DG39:DC254_J	-0.154	0.092	0.194	2.224	3.815	-0.114
1	40	I_DG40:DC253_J	0.106	0.117	0.396	-3.201	-21.844	-5.498
1	46	I_DG46:DC247_J	-0.536	0.046	-0.755	-21.16	-19.789	11.134
1	58	I_DG58:DC235_J	-0.271	-0.047	-0.097	-10.36	-16.969	-0.442
1	59	I_DG59:DC234_J	-0.331	0.013	0.168	-13.881	-16.765	2.121
1	63	I_DG63:DC230_J	0.194	-0.058	-0.696	-22.587	-25.486	1.574
1	68	I_DG68:DC225_J	-0.308	-0.36	-0.91	8.514	4.741	-1.132
1	71	I_DG71:DC222_J	-0.068	0.003	0.887	11.863	3.99	7.68
1	78	I_DG78:DC215_J	-0.129	-0.047	-0.423	1.782	-10.65	8.156
1	81	I_DG81:DC212_J	-0.042	0.157	0.543	17.878	3.159	3.044
1	87	I_DG87:DC206_J	-0.191	-0.048	-0.743	-0.323	-3.172	3.96
1	94	I_DG94:DC199_J	-0.038	0.065	-1.197	-36.217	-3.843	-3.94
1	97	I_DG97:DC196_J	-0.114	0.058	0.817	14.429	-7.145	-0.072
1	98	I_DG98:DC195_J	-0.05	0.066	-0.294	8.722	-12.708	4.954
1	100	I_DG100:DC193_J	-0.179	-0.12	0.794	10.752	17.87	11.04
1	103	I_DG103:DC190_J	0.107	0.135	0.138	-2.936	-1.086	-0.383
1	121	I_DG121:DC172_J	-0.02	0.082	-0.408	-1.548	-18.07	0.295
1	122	I_DG122:DC171_J	0.001	0.089	0.351	15.62	-11.578	-0.149
1	125	I_DG125:DC168_J	-0.08	0.007	-0.685	-5.552	-16.145	2.568
1	131	I_DG131:DC162_J	-0.49	-0.232	-0.959	-13.886	-27.05	10.049
1	134	I_DG134:DC159_J	-0.083	-0.115	-0.696	-10.119	-3.862	-1.44
1	135	I_DG135:DC158_J	-0.057	-0.026	0.347	-13.569	-0.623	1.883
1	137	I_DG137:DC156_J	-0.33	-0.001	-0.657	-6.608	-18.459	7.985
1	138	I_DG138:DC155_J	-0.147	-0.02	-0.927	-16.586	-8.638	-0.158
1	144	I_DG144:DC149_J	-0.151	-0.116	-0.539	4.491	-16.928	3.309
1	2	I_DT2:DA291_J	-0.055	-0.138	-0.894	-3.681	-1.171	-4.059
1	6	I_DT6:DA287_J	0.105	-0.323	-0.514	9.871	-7.354	-0.095
1	8	I_DT8:DA285_J	-0.132	0.029	-0.121	-12.708	-21.654	-1.257
1	14	I_DT14:DA279_J	-0.03	0.071	0.158	-14.991	-28.63	-1.542
1	20	I_DT20:DA273_J	-0.107	-0.032	-0.386	3.674	-24.361	-0.137
1	21	I_DT21:DA272_J	-0.154	-0.044	-0.075	-5.837	-13.747	-2.142
1	23	I_DT23:DA270_J	0.087	0.098	0.053	-10.387	-1.348	-4.604
1	32	I_DT32:DA261_J	-0.007	-0.152	0.284	7.858	11.235	1.508
1	34	I_DT34:DA259_J	0.112	-0.076	-0.429	9.949	-19.052	3.058
1	36	I_DT36:DA257_J	-0.406	-0.096	0.702	-5.189	-6.862	-2.515
1	37	I_DT37:DA256_J	-0.15	-0.201	0.726	7.46	-8.938	-3.705
1	38	I_DT38:DA255_J	-0.179	-0.026	-0.002	-6.768	-24.198	-6.91
1	45	I_DT45:DA248_J	-0.15	0.025	0.46	-9.232	-16.431	-8.905
1	48	I_DT48:DA245_J	-0.123	-0.02	-0.309	-5.583	-16.263	0.931
1	52	I_DT52:DA241_J	-0.263	0.025	0.109	-2.86	-25.037	-18.524
1	62	I_DT62:DA231_J	-0.254	-0.033	0.12	-7.933	-15.376	-5.609
1	64	I_DT64:DA229_J	-0.027	-0.178	-1.243	-14.029	-37.684	1.976
1	65	I_DT65:DA228_J	0.083	-0.037	-0.283	-2.813	-11.32	-2.813
1	70	I_DT70:DA223_J	0.058	-0.159	-0.752	11.268	5.184	-2.153
1	74	I_DT74:DA219_J	-0.264	0.04	-0.053	5.846	-4.719	-1.968
1	75	I_DT75:DA218_J	-0.259	-0.028	-0.108	11.441	-8.825	2.981
1	80	I_DT80:DA213_J	-0.172	-0.159	-0.629	8.342	3.005	0.431
1	86	I_DT86:DA207_J	-0.105	-0.016	-0.071	1.529	-3.235	2.525
1	90	I_DT90:DA203_J	-0.243	-0.022	0.099	-7.835	-10.073	-4.517
1	91	I_DT91:DA202_J	0.025	-0.08	-0.55	-4.06	-16.01	3.02
1	92	I_DT92:DA201_J	0.123	-0.175	-0.353	-1.045	-11.989	7.466
1	93	I_DT93:DA200_J	0.224	-0.314	0.444	-0.448	4.973	4.533
1	96	I_DT96:DA197_J	0.089	-0.081	0.644	12.016	-2.653	0.081
1	104	I_DT104:DA189_J	-0.049	0.006	0.18	2.413	-3.669	-1.972
1	105	I_DT105:DA188_J	-0.081	-0.172	-0.305	-12.436	-9.636	3.774
1	106	I_DT106:DA187_J	0.081	-0.322	-0.551	-10.674	-20.203	4.115
1	112	I_DT112:DA181_J	-0.352	-0.102	0.754	-0.698	-1.784	-0.514
1	117	I_DT117:DA176_J	-0.189	-0.038	0.333	-11.355	-8.921	0.227
1	118	I_DT118:DA175_J	-0.07	-0.183	0.945	-33.474	-4.189	0.793
1	119	I_DT119:DA174_J	-0.393	-0.144	0.852	-18.032	-12.349	2.654
1	120	I_DT120:DA173_J	-0.158	0.024	0.592	-8.929	-20.379	-0.534
1	123	I_DT123:DA170_J	-0.094	-0.08	-0.134	18.085	-5.974	-1.495
1	128	I_DT128:DA165_J	-0.194	-0.188	0.643	-2.799	-15.763	4.032
1	130	I_DT130:DA163_J	-0.346	0.096	0.031	7.836	-17.546	-6.132
1	136	I_DT136:DA157_J	-0.054	0.117	-0.396	8.365	-6.535	-8.237
1	140	I_DT140:DA153_J	-0.065	-0.009	0.293	6.687	-16.296	-6.209
1	142	I_DT142:DA151_J	-0.07	0.0	0.433	2.844	-18.269	1.356
1	143	I_DT143:DA150_J	0.245	0.024	-0.495	15.116	-22.789	3.256
1	146	I_DT146:DA147_J	-0.43	0.111	0.244	9.25	-10.35	-18.75

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.