A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
Search for released structures

NDB ID: NA2360  PDB ID: 3W97 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
11II_DA1DT2:DA291DT292_JJ0.009-1.0462.9182.4782.76833.226-2.220.3442.8184.822-4.31733.427
14II_DA4DA5:DT288DT289_JJ-0.4290.1943.3162.1127.31839.481-0.5630.8683.27310.712-3.09140.18
15II_DA5DT6:DA287DT288_JJ0.3360.0812.663-4.1121.61234.251-0.065-1.0822.6072.7236.94634.526
17II_DA7DT8:DA285DT286_JJ-0.587-0.6773.445-0.7024.07233.835-1.830.8863.3546.9641.20134.079
111II_DA11DC12:DG281DT282_JJ0.012-0.773.298-0.948-0.233.536-1.302-0.1773.301-0.3471.64233.55
117II_DA17DG18:DC275DT276_JJ0.2230.6343.0952.6339.90434.155-0.370.013.15916.411-4.36235.616
119II_DA19DT20:DA273DT274_JJ-0.211-0.4273.486-2.0754.9635.561-1.4410.0293.4048.0643.37435.952
124II_DA24DC25:DG268DT269_JJ0.3130.3063.173-2.2634.91135.192-0.195-0.8333.168.0643.71635.592
127II_DA27DA28:DT265DT266_JJ0.064-0.0062.946-5.45-5.24835.0290.669-0.8092.875-8.5968.92635.812
128II_DA28DA29:DT264DT265_JJ-1.010.0353.593-3.69-9.64242.9571.0530.963.576-12.9434.95444.123
129II_DA29DA30:DT263DT264_JJ0.483-0.2132.8194.424-3.41534.230.1-0.2172.864-5.754-7.45434.67
130II_DA30DG31:DC262DT263_JJ0.135-0.1733.525-6.8373.05435.292-0.743-1.2583.4144.96811.12336.053
135II_DA35DT36:DA257DT258_JJ0.619-1.3353.346-0.879-4.72334.28-1.482-1.1833.477-7.9641.48234.605
141II_DA41DA42:DT251DT252_JJ-0.120.5533.801-4.92922.94534.578-2.211-0.4743.49234.1717.3441.587
142II_DA42DA43:DT250DT251_JJ0.234-0.6643.096-9.8942.23529.539-1.629-2.1862.8174.2318.72231.195
143II_DA43DC44:DG249DT250_JJ1.341-0.0243.44424.783-0.09632.865-0.0221.3463.574-0.146-37.83540.956
151II_DA51DT52:DA241DT242_JJ-1.688-0.1832.983-5.371-4.93932.5490.4682.0883.205-8.6769.43533.335
154II_DA54DA55:DT238DT239_JJ-0.6710.093.334-2.76419.76422.037-4.2030.6992.61242.225.90429.647
155II_DA55DA56:DT237DT238_JJ-0.491-0.0533.2036.808-7.3739.7960.7051.4223.044-10.624-9.81440.991
156II_DA56DA57:DT236DT237_JJ1.0360.8023.4397.0174.61142.1980.596-0.6563.6226.329-9.63142.988
157II_DA57DG58:DC235DT236_JJ0.822.0163.6381.617-19.61639.2184.559-0.9492.44-27.242-2.24643.706
161II_DA61DT62:DA231DT232_JJ-0.347-1.2813.2831.863.14234.082-2.660.8763.1335.342-3.16234.272
167II_DA67DG68:DC225DT226_JJ1.2281.3663.54211.112-3.61437.1442.545-0.3313.606-5.508-16.93738.876
172II_DA72DA73:DT220DT221_JJ-0.44-0.1483.666-0.2166.89831.532-1.6360.753.55712.5060.39232.259
173II_DA73DT74:DA219DT220_JJ-0.294-1.2853.045-2.875.96230.568-3.40.0582.76611.1465.36531.259
177II_DA77DG78:DC215DT216_JJ2.1480.7393.3645.6143.47335.4150.658-2.6063.7045.648-9.13136.006
182II_DA82DA83:DT210DT211_JJ0.626-0.1663.5584.54813.45633.771-2.296-0.3123.31121.994-7.43436.556
183II_DA83DC84:DG209DT210_JJ0.4250.2933.0961.2628.22532.311-0.804-0.543.08914.482-2.22233.337
185II_DA85DT86:DA207DT208_JJ-0.331-0.2393.0363.75-3.8637.230.0950.9672.999-6.008-5.83737.604
195II_DA95DT96:DA197DT198_JJ0.045-0.2292.609-9.874-3.89228.8670.18-1.6392.47-7.49419.01430.717
199II_DA99DG100:DC193DT194_JJ2.1990.992.603-6.271-9.04934.9682.451-4.1071.888-14.61810.1336.609
1102II_DA102DG103:DC190DT191_JJ-0.80.1793.496-10.20214.6130.405-2.163-0.3913.33725.31117.67435.135
1109II_DA109DA110:DT183DT184_JJ-0.232-0.5893.1570.929-5.7131.766-0.0650.5793.203-10.324-1.6832.275
1110II_DA110DA111:DT182DT183_JJ0.1930.0083.333-5.48310.90837.755-1.288-0.9393.15916.3428.21439.611
1111II_DA111DT112:DA181DT182_JJ-0.687-1.163.544-11.879-14.11334.8810.273-0.663.761-21.76518.3239.324
1113II_DA113DC114:DG179DT180_JJ-0.636-0.4162.9452.62112.28727.322-2.9961.6962.46424.439-5.21330.022
1115II_DA115DC116:DG177DT178_JJ0.994-1.2583.926-4.6590.06731.651-2.297-2.7973.7430.1218.48531.984
1124II_DA124DG125:DC168DT169_JJ-0.041-0.1284.092-2.0652.86537.074-0.676-0.2794.0684.4933.23937.235
1126II_DA126DA127:DT166DT167_JJ-0.459-0.0443.2691.6971.84235.128-0.3461.013.2373.048-2.80735.214
1127II_DA127DT128:DA165DT166_JJ0.474-0.2222.856-4.339-6.57635.3130.451-1.2982.775-10.6767.04436.154
1133II_DA133DG134:DC159DT160_JJ-0.9010.0123.38-5.75713.00924.262-3.2510.4073.11728.07612.42428.071
1139II_DA139DT140:DA153DT154_JJ-0.528-1.2793.443-1.526-12.61438.318-0.2610.5743.685-18.6032.25140.294
1141II_DA141DT142:DA151DT152_JJ0.537-0.7623.286-1.871.26732.026-1.604-1.3053.2182.2933.38532.103
1145II_DA145DT146:DA147DT148_JJ-1.41-0.7482.665-8.7957.98934.135-2.1621.2252.69813.12614.4536.086
13II_DC3DA4:DT289DG290_JJ-0.4161.3463.511-3.4212.41133.5291.8890.1113.6194.1595.90133.782
19II_DC9DC10:DG283DG284_JJ0.2131.0932.6655.60411.31432.7890.3250.3832.87319.179-9.535.073
110II_DC10DA11:DT282DG283_JJ-1.6640.3233.479-13.6059.13127.238-1.4270.0373.79117.52226.10831.706
112II_DC12DC13:DG280DG281_JJ0.356-1.0644.245-3.98724.62631.202-5.0-1.0792.68138.9316.30339.754
113II_DC13DT14:DA279DG280_JJ-1.080.7953.2871.5039.46429.825-0.382.2973.32117.818-2.8331.294
116II_DC16DA17:DT276DG277_JJ1.162.9813.9048.808-16.18246.3724.838-0.6782.934-19.663-10.70349.709
122II_DC22DT23:DA270DG271_JJ0.574-1.0223.9568.348.58130.348-3.6080.7143.57315.649-15.20932.571
125II_DC25DC26:DG267DG268_JJ0.14-0.0933.494-0.1395.58136.733-0.94-0.2393.4448.7930.21937.141
126II_DC26DA27:DT266DG267_JJ-0.891.9673.589-5.881-15.08243.6443.8020.622.885-19.5067.60646.411
144II_DC44DT45:DA248DG249_JJ-1.4290.4023.964-15.25512.04931.267-1.572-0.5284.10220.10725.45736.689
147II_DC47DT48:DA245DG246_JJ0.9461.9972.9955.635-4.86543.2923.087-0.7842.861-6.537-7.57143.897
149II_DC49DC50:DG243DG244_JJ0.1381.1422.63610.3631.138.691.5660.7692.6161.625-15.30640.016
150II_DC50DA51:DT242DG243_JJ-0.2370.2033.654-11.06526.39827.192-3.395-1.1982.75443.6618.30139.284
153II_DC53DA54:DT239DG240_JJ0.870.2874.0031.08520.68426.71-3.785-1.2773.39238.297-2.00833.684
160II_DC60DA61:DT232DG233_JJ-0.1690.0913.0952.5855.55235.191-0.6120.633.0549.098-4.23535.704
166II_DC66DA67:DT226DG227_JJ-1.142.1443.806-16.81-5.01543.8113.182-0.233.729-6.42321.53147.032
169II_DC69DT70:DA223DG224_JJ1.2151.5923.47812.169-5.95441.9072.739-0.3743.439-8.074-16.50443.949
176II_DC76DA77:DT216DG217_JJ-0.8281.4123.6-2.9411.74344.061.6950.7933.6962.3193.91444.186
179II_DC79DT80:DA213DG214_JJ1.0671.8653.1923.14-6.43342.9473.104-1.1522.963-8.713-4.25443.512
184II_DC84DA85:DT208DG209_JJ0.0170.4793.746-8.50411.19430.356-1.346-1.6863.56720.07915.25433.384
188II_DC88DC89:DG204DG205_JJ0.0340.5963.444-3.945-10.6340.7111.957-0.4673.182-14.9335.54242.195
189II_DC89DT90:DA203DG204_JJ-1.3321.0683.0511.401-20.30237.5223.231.9582.173-29.094-2.00742.51
1101II_DC101DA102:DT191DG192_JJ1.6480.7213.16316.7961.96239.5570.776-0.4543.5792.752-23.55542.886
1107II_DC107DC108:DG185DG186_JJ-0.9872.0483.328-14.2651.92432.8283.029-0.6563.5533.21823.86335.765
1108II_DC108DA109:DT184DG185_JJ0.6131.763.4034.137-4.52243.0812.822-0.4183.254-6.121-5.643.494
1114II_DC114DA115:DT178DG179_JJ-0.1760.1743.115-0.3668.70236.578-0.8190.2273.07613.6280.57237.566
1116II_DC116DT117:DA176DG177_JJ-0.102-0.53.8582.591-0.02735.914-0.8050.5983.842-0.044-4.19636.005
1129II_DC129DT130:DA163DG164_JJ-0.9172.1973.0938.51-19.57741.744.0611.7171.742-25.57-11.11446.664
1132II_DC132DA133:DT160DG161_JJ2.080.7583.3628.9121.60231.867-1.924-1.8333.60634.195-14.10439.337
115II_DG15DC16:DG277DC278_JJ-0.4520.6062.9150.49-1.99931.4151.4470.9142.864-3.687-0.90331.48
118II_DG18DA19:DT274DC275_JJ-0.059-0.2633.3397.115-6.75939.5940.3890.8923.281-9.796-10.31240.744
131II_DG31DT32:DA261DC262_JJ0.443-0.823.5923.9714.17628.656-2.6140.0623.4698.33-7.92129.218
133II_DG33DT34:DA259DC260_JJ0.284-0.7283.2839.805-6.21331.098-0.1891.2183.3-11.115-17.54133.144
139II_DG39DG40:DC253DC254_JJ-0.7960.4643.628-2.85210.5531.36-1.2170.8453.64618.8165.08733.164
140II_DG40DA41:DT252DC253_JJ-0.8410.4683.3321.1243.77135.2730.2031.5483.3356.2-1.84835.484
146II_DG46DC47:DG246DC247_JJ-1.0490.5853.081-11.825-2.68535.581.2560.1033.206-4.24418.69437.526
158II_DG58DG59:DC234DC235_JJ0.6930.9773.2133.48310.08240.1590.276-0.5973.39714.378-4.96741.495
159II_DG59DC60:DG233DC234_JJ-0.499-0.1033.3-10.494-5.65635.8850.597-0.6323.291-8.88316.48137.751
163II_DG63DT64:DA229DC230_JJ-1.238-0.3242.739-0.52917.71528.01-3.0232.1032.17932.7770.97833.051
168II_DG68DC69:DG224DC225_JJ-0.8650.763.351-2.988-11.31437.8742.4550.9253.065-16.9434.47539.577
171II_DG71DA72:DT221DC222_JJ-0.8720.0173.3673.61410.91634.679-1.5141.9033.12717.72-5.86636.48
178II_DG78DC79:DG214DC215_JJ-1.6751.8633.315-5.683-10.96437.5064.0251.8292.894-16.5128.5639.418
181II_DG81DA82:DT211DC212_JJ-0.462-0.0833.9148.71810.89831.023-2.2022.4383.44419.204-15.36333.947
187II_DG87DC88:DG205DC206_JJ-1.730.6754.352-17.572-11.4338.7762.45-0.0624.362-15.88424.41943.887
194II_DG94DA95:DT198DC199_JJ-0.8250.13.431-6.986-1.8330.3990.560.1043.517-3.42913.09231.225
197II_DG97DG98:DC195DC196_JJ0.5180.3543.49912.65412.31532.116-1.3471.1393.37820.446-21.00836.537
198II_DG98DA99:DT194DC195_JJ-1.3871.8473.765-8.316-10.11246.9613.1220.963.503-12.4110.20648.652
1100II_DG100DC101:DG192DC193_JJ-1.5140.3263.7964.046-5.45537.7321.2692.8793.541-8.352-6.19538.316
1103II_DG103DT104:DA189DC190_JJ0.208-1.053.2662.380.11528.349-2.1630.1223.2680.234-4.84828.447
1121II_DG121DG122:DC171DC172_JJ0.4121.142.671-2.1471.90241.0631.453-0.7772.6952.7083.05641.159
1122II_DG122DT123:DA170DC171_JJ-0.641-0.4963.1461.1459.88330.621-2.5511.3492.82918.123-2.132.16
1125II_DG125DA126:DT167DC168_JJ-0.268-0.3083.283-0.371.70840.176-0.6420.3483.272.4840.53840.213
1131II_DG131DC132:DG161DC162_JJ-0.6652.4893.512-18.145-10.65545.3823.768-0.5912.943-13.01822.16849.788
1134II_DG134DG135:DC158DC159_JJ0.102-0.4373.341-6.78614.32828.027-3.339-1.3932.71227.02312.79932.122
1135II_DG135DT136:DA157DC158_JJ-0.182-0.1062.8116.639-4.67333.3930.4481.1992.716-7.987-11.34734.338
1137II_DG137DG138:DC155DC156_JJ-1.1290.0073.286-4.76914.17333.274-2.0261.1233.1623.3417.85436.393
1138II_DG138DA139:DT154DC155_JJ-0.5140.6182.671-8.909-4.18336.91.382-0.1442.637-6.46813.77638.146
1144II_DG144DA145:DT148DC149_JJ-0.663-0.1983.361-5.61811.76137.57-1.7120.2983.22217.6258.41939.69
12II_DT2DC3:DG290DA291_JJ0.7330.1443.3275.3187.57636.425-0.804-0.4173.3611.885-8.34337.544
16II_DT6DA7:DT286DA287_JJ-0.3720.3663.476-1.322.54234.1920.1940.413.5054.3152.2434.308
18II_DT8DC9:DG284DA285_JJ0.473-0.4643.136-2.255-0.83337.69-0.614-1.0093.112-1.2883.48637.764
114II_DT14DG15:DC278DA279_JJ0.3752.5193.003-1.637-9.36946.1793.801-0.5832.462-11.7972.06147.096
120II_DT20DT21:DA272DA273_JJ0.547-0.5553.4061.0-1.69237.966-0.626-0.7073.44-2.599-1.53638.015
121II_DT21DC22:DG271DA272_JJ0.607-0.3583.07-1.432-2.53637.972-0.246-1.13.062-3.892.19738.08
123II_DT23DA24:DT269DA270_JJ0.0790.1662.9977.7756.13836.074-0.4890.8242.9399.689-12.27237.366
132II_DT32DG33:DC260DA261_JJ0.3870.4443.5215.27817.80234.512-1.750.1363.37227.667-8.20439.055
134II_DT34DA35:DT258DA259_JJ-0.1860.033.584-0.09210.04737.302-1.3180.2683.47715.3680.14138.585
136II_DT36DT37:DA256DA257_JJ0.292-0.0823.1874.491-8.40334.7461.0450.1563.134-13.754-7.3535.99
137II_DT37DT38:DA255DA256_JJ-0.4480.5993.4728.211-1.54640.7851.0141.543.302-2.19-11.63541.597
138II_DT38DG39:DC254DA255_JJ1.5532.0213.161-1.314-3.73439.5073.381-2.4292.914-5.5081.93839.697
145II_DT45DG46:DC247DA248_JJ1.2221.5513.27215.50710.32941.2620.978-0.0253.74813.84-20.77845.106
148II_DT48DC49:DG244DA245_JJ-0.4950.1663.554-6.8244.92434.071-0.542-0.3113.5738.24811.43135.065
152II_DT52DC53:DG240DA241_JJ1.086-0.0323.32210.6220.19524.665-0.1230.6353.4830.433-23.5226.823
162II_DT62DG63:DC230DA231_JJ0.41.4873.6624.32716.28632.452-0.4210.1043.96326.992-7.17236.461
164II_DT64DT65:DA228DA229_JJ0.0260.2893.299-13.6385.22328.718-0.431-2.5342.999.77325.51832.148
165II_DT65DC66:DG227DA228_JJ1.0841.1142.7139.953.4136.0111.336-0.5272.9875.377-15.68737.467
170II_DT70DG71:DC222DA223_JJ0.824-0.0713.223-4.80315.72330.845-2.431-2.0822.71927.2688.32934.859
174II_DT74DT75:DA218DA219_JJ0.5880.0743.1872.9325.37334.367-0.678-0.5443.1999.004-4.91334.892
175II_DT75DC76:DG217DA218_JJ-0.2190.2923.4582.1243.9228.682-0.3320.9343.4427.852-4.25429.019
180II_DT80DG81:DC212DA213_JJ-0.0960.7963.346-4.7030.40836.4451.206-0.5063.340.6497.48136.739
186II_DT86DG87:DC206DA207_JJ0.9290.5913.1926.39914.84431.907-1.286-0.5463.26625.092-10.81635.673
190II_DT90DT91:DA202DA203_JJ0.299-0.2413.1243.3526.77935.736-1.278-0.0363.04410.896-5.38836.502
191II_DT91DT92:DA201DA202_JJ0.3720.883.279-0.10610.33530.772-0.329-0.6863.38918.8220.19432.422
192II_DT92DT93:DA200DA201_JJ0.0990.2553.705-8.17610.57530.551-1.577-1.7363.46418.97114.66633.283
193II_DT93DG94:DC199DA200_JJ-0.045-0.7614.0710.00533.28627.753-4.661.1572.02250.313-15.12344.209
196II_DT96DG97:DC196DA197_JJ0.5270.2713.0232.0612.76234.8330.062-0.5863.064.6-3.43234.998
1104II_DT104DT105:DA188DA189_JJ0.404-0.2453.5087.88314.59331.506-2.7030.5813.11224.838-13.41835.507
1105II_DT105DT106:DA187DA188_JJ0.4960.333.2473.8111.38333.367-1.167-0.2433.22119.074-6.38435.403
1106II_DT106DC107:DG186DA187_JJ1.4591.0653.15216.8992.41240.091.19-0.2263.523.341-23.40943.435
1112II_DT112DA113:DT180DA181_JJ-0.377-0.3763.2114.829-1.37635.101-0.4211.3113.145-2.268-7.95735.447
1117II_DT117DT118:DA175DA176_JJ-0.0740.1834.105-4.4472.06243.361-0.002-0.4374.0972.785.99543.623
1118II_DT118DT119:DA174DA175_JJ-0.7520.0333.3974.0-15.39232.3812.3091.8042.972-25.753-6.69335.982
1119II_DT119DT120:DA173DA174_JJ-0.220.9923.3162.294-20.39241.4552.9390.4692.57-26.918-3.02846.055
1120II_DT120DG121:DC172DA173_JJ0.4441.543.1456.3364.13238.961.790.0833.3146.125-9.39239.66
1123II_DT123DA124:DT169DA170_JJ0.1890.9533.6211.59911.133.046-0.361-0.0353.74318.851-2.71534.847
1128II_DT128DC129:DG164DA165_JJ-0.264-0.7343.226-6.5983.42834.294-1.723-0.5363.1355.7311.02935.067
1130II_DT130DG131:DC162DA163_JJ0.892.0633.66512.0613.91338.1921.0430.3424.22519.915-17.26242.248
1136II_DT136DG137:DC156DA157_JJ0.8471.0293.4876.58614.61438.318-0.338-0.3893.71621.17-9.54141.419
1140II_DT140DA141:DT152DA153_JJ-0.136-0.0383.0842.97211.09930.924-1.8480.7162.87619.971-5.34832.94
1142II_DT142DT143:DA150DA151_JJ0.2860.8522.61711.2488.60734.9820.3740.7932.70813.647-17.83437.657
1143II_DT143DG144:DC149DA150_JJ-0.6190.5023.544-7.8322.88929.656-2.63-0.2153.19837.79212.92938.099

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.