A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Aug-2019 number of released structures: 10334
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NDB ID: NA2361  PDB ID: 3W98 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11I_DA1:DT292_J0.38-0.625-1.805-23.8117.1655.674
14I_DA4:DT289_J0.138-0.126-0.57412.455-18.6955.05
15I_DA5:DT288_J0.105-0.165-0.624-3.949-16.9996.279
17I_DA7:DT286_J0.2750.013-0.905-3.663-14.247-4.109
111I_DA11:DT282_J0.0920.024-0.2874.4957.012-11.565
117I_DA17:DT276_J0.003-0.1370.7450.269-4.398-3.752
119I_DA19:DT274_J-0.24-0.2770.053-6.99-16.6259.086
124I_DA24:DT269_J0.282-0.0570.157-0.605-16.686-8.428
127I_DA27:DT266_J0.225-0.0690.603-8.318-15.597-10.928
128I_DA28:DT265_J0.044-0.2120.64319.133.6350.961
129I_DA29:DT264_J0.2570.0190.47212.598-14.267-7.789
130I_DA30:DT263_J0.034-0.098-0.0938.588-17.865.918
135I_DA35:DT258_J0.035-0.1670.292-14.383-0.1081.863
141I_DA41:DT252_J0.023-0.310.7059.27-7.9150.44
142I_DA42:DT251_J-0.067-0.1010.209-4.0545.134-4.625
143I_DA43:DT250_J-0.05-0.4371.15.2417.6712.914
151I_DA51:DT242_J-0.093-0.1390.041-2.663-16.0438.961
154I_DA54:DT239_J0.03-0.216-1.101-14.708-3.775-2.439
155I_DA55:DT238_J-0.082-0.1040.521-3.327-2.873-4.922
156I_DA56:DT237_J0.155-0.0870.44818.677-29.178-8.064
157I_DA57:DT236_J0.152-0.1190.2925.769-22.122-4.481
161I_DA61:DT232_J0.154-0.215-0.087-1.405-4.85910.142
167I_DA67:DT226_J0.122-0.1120.6745.367-19.239-8.922
172I_DA72:DT221_J-0.025-0.0330.1268.346-2.7461.297
173I_DA73:DT220_J0.038-0.154-0.227-0.703-0.8480.589
177I_DA77:DT216_J0.2260.0050.60812.597-15.202-15.241
182I_DA82:DT211_J-0.038-0.062-0.38-2.351-4.12-0.848
183I_DA83:DT210_J0.183-0.141-0.827-12.481-5.6170.85
185I_DA85:DT208_J-0.07-0.105-0.157-8.309-13.7935.71
195I_DA95:DT198_J0.041-0.211-0.878-16.149-1.3786.184
199I_DA99:DT194_J0.180.0880.0732.931-27.495-10.306
1102I_DA102:DT191_J-0.026-0.159-0.8177.193-2.1076.75
1109I_DA109:DT184_J-0.112-0.1520.327.725-2.040.214
1110I_DA110:DT183_J0.099-0.1120.36711.529-2.711-0.391
1111I_DA111:DT182_J0.16-0.1120.60918.674-2.6231.326
1113I_DA113:DT180_J0.002-0.1430.3360.4010.1838.815
1115I_DA115:DT178_J0.104-0.170.25710.221-5.3294.57
1124I_DA124:DT169_J0.058-0.235-0.75518.245-17.9564.404
1126I_DA126:DT167_J-0.176-0.037-0.462-15.649-11.1550.864
1127I_DA127:DT166_J0.2910.0140.103-4.608-17.411-2.511
1133I_DA133:DT160_J0.330.1010.26710.68-8.3215.056
1139I_DA139:DT154_J0.241-0.1010.64116.463-18.471-7.621
1141I_DA141:DT152_J0.242-0.0870.5112.994-24.069-3.127
1145I_DA145:DT148_J0.167-0.018-0.075-8.156-21.364-2.949
13I_DC3:DG290_J0.253-0.361-0.6231.85210.7494.325
19I_DC9:DG284_J0.2590.1270.37-13.7673.3734.624
110I_DC10:DG283_J0.254-0.154-0.06-1.4941.438-2.062
112I_DC12:DG281_J0.007-0.074-0.73413.283-3.815-2.861
113I_DC13:DG280_J0.0070.030.316-17.549-4.0022.538
116I_DC16:DG277_J0.504-0.150.4619.243-15.201-4.482
122I_DC22:DG271_J0.062-0.1050.099-12.2-7.958-3.884
125I_DC25:DG268_J0.157-0.220.852-6.682-6.706-2.443
126I_DC26:DG267_J0.084-0.3571.069-2.025-2.027-0.633
144I_DC44:DG249_J0.286-0.070.176-5.339-4.1926.738
147I_DC47:DG246_J0.13-0.2480.5540.032-25.986-1.979
149I_DC49:DG244_J0.101-0.0110.764-15.318-0.333-0.83
150I_DC50:DG243_J0.044-0.143-0.332-1.087-11.798-0.684
153I_DC53:DG240_J0.080.064-0.17113.442-16.193-0.845
160I_DC60:DG233_J0.1660.0210.327-0.43110.181.583
166I_DC66:DG227_J0.028-0.0670.4212.51211.4813.625
169I_DC69:DG224_J-0.19-0.0260.624-4.252-17.124-5.782
176I_DC76:DG217_J0.138-0.0220.2115.22211.8621.602
179I_DC79:DG214_J-0.005-0.0320.6673.92-18.942-2.487
184I_DC84:DG209_J0.245-0.262-0.1885.3033.553-0.209
188I_DC88:DG205_J0.0390.0310.255-1.465-22.154-2.833
189I_DC89:DG204_J-0.015-0.0570.896-23.4656.241-2.225
1101I_DC101:DG192_J0.255-0.009-0.22919.937-19.35-0.181
1107I_DC107:DG186_J0.143-0.076-0.1522.32111.2143.479
1108I_DC108:DG185_J-0.1830.0440.4652.428-19.35-3.853
1114I_DC114:DG179_J0.086-0.0180.4343.5794.130.136
1116I_DC116:DG177_J0.218-0.0930.5345.251-0.4150.523
1129I_DC129:DG164_J0.078-0.1640.337-0.4121.571.174
1132I_DC132:DG161_J0.012-0.2430.528.972-7.53-5.805
115I_DG15:DC278_J-0.339-0.0110.198-0.953-14.492-0.616
118I_DG18:DC275_J-0.205-0.0110.2424.829-13.7944.959
131I_DG31:DC262_J-0.143-0.077-0.371-4.793-7.7362.474
133I_DG33:DC260_J-0.203-0.077-0.027-8.5171.2251.351
139I_DG39:DC254_J-0.1510.1150.68611.1862.2861.946
140I_DG40:DC253_J0.054-0.1050.7396.232-20.734-5.341
146I_DG46:DC247_J-0.212-0.163-0.871-4.574-12.9372.05
158I_DG58:DC235_J-0.172-0.181-0.61-10.892-2.93-4.415
159I_DG59:DC234_J-0.211-0.026-0.338-5.842-13.0633.252
163I_DG63:DC230_J-0.061-0.0340.15-5.7224.3323.205
168I_DG68:DC225_J-0.326-0.177-0.2727.45917.657-2.327
171I_DG71:DC222_J-0.272-0.032-0.723-8.179-12.2288.382
178I_DG78:DC215_J0.081-0.108-0.15810.8419.256-0.943
181I_DG81:DC212_J-0.2260.0480.1634.5498.4445.227
187I_DG87:DC206_J-0.217-0.21-1.169-13.7436.4482.629
194I_DG94:DC199_J0.1-0.008-0.832-7.463-8.2542.362
197I_DG97:DC196_J-0.0650.0670.6377.446-7.68-1.73
198I_DG98:DC195_J-0.156-0.052-0.5730.66-14.9346.643
1100I_DG100:DC193_J-0.11-0.146-0.07410.63414.5243.57
1103I_DG103:DC190_J-0.0510.1130.3856.7960.5060.583
1121I_DG121:DC172_J-0.1390.10.20312.097-3.185-0.785
1122I_DG122:DC171_J0.0750.0390.60919.407-1.433-4.188
1125I_DG125:DC168_J-0.11-0.021-0.622-3.325-5.827-1.089
1131I_DG131:DC162_J-0.228-0.2530.181-4.803-26.790.253
1134I_DG134:DC159_J0.423-0.3031.34422.352-3.686-9.095
1135I_DG135:DC158_J0.355-0.0290.1578.423-10.391-5.915
1137I_DG137:DC156_J-0.246-0.03-0.1845.895-6.7794.378
1138I_DG138:DC155_J-0.082-0.037-0.724-2.557-3.9570.823
1144I_DG144:DC149_J-0.122-0.0790.85425.314-13.963-1.753
12I_DT2:DA291_J0.166-0.22-0.555-16.214.9045.915
16I_DT6:DA287_J0.114-0.202-0.61826.048-2.382-0.864
18I_DT8:DA285_J-0.0940.073-0.508-8.81-3.808-5.24
114I_DT14:DA279_J0.03-0.1320.859-8.989-4.988-1.825
120I_DT20:DA273_J-0.123-0.064-0.2967.929-13.86-3.691
121I_DT21:DA272_J0.082-0.225-0.2029.3451.3095.122
123I_DT23:DA270_J-0.123-0.1150.901-14.54-0.0610.545
132I_DT32:DA261_J0.096-0.159-0.56.625-0.6650.972
134I_DT34:DA259_J-0.015-0.1950.728-9.631-8.0222.774
136I_DT36:DA257_J-0.235-0.1191.029-7.3160.244-0.521
137I_DT37:DA256_J-0.182-0.1410.647-4.331-10.102-3.812
138I_DT38:DA255_J-0.263-0.0630.188-10.322-23.282-7.616
145I_DT45:DA248_J-0.194-0.1090.741-1.535-17.5561.208
148I_DT48:DA245_J-0.1110.0670.094-9.053-12.758-3.069
152I_DT52:DA241_J-0.2120.032-0.235-0.936-18.701-19.07
162I_DT62:DA231_J-0.058-0.098-0.288-1.082-7.3450.909
164I_DT64:DA229_J0.02-0.152-0.109-2.038-8.6965.446
165I_DT65:DA228_J-0.077-0.0820.2361.187-1.432-0.359
170I_DT70:DA223_J-0.081-0.13-0.25-4.6719.522-5.24
174I_DT74:DA219_J-0.11-0.097-0.4167.362-1.152.562
175I_DT75:DA218_J-0.119-0.0870.0543.3511.1096.719
180I_DT80:DA213_J-0.223-0.052-0.089-0.686.698-0.837
186I_DT86:DA207_J0.164-0.1130.163-1.404-1.6231.745
190I_DT90:DA203_J-0.173-0.0930.402-9.301-14.054-1.692
191I_DT91:DA202_J0.048-0.145-0.041-5.73-15.5964.691
192I_DT92:DA201_J0.062-0.1940.062-1.562-7.96310.603
193I_DT93:DA200_J0.071-0.0730.382-12.167-10.913-4.177
196I_DT96:DA197_J-0.094-0.1240.2830.1970.7152.424
1104I_DT104:DA189_J-0.142-0.1380.564-0.004-2.944.792
1105I_DT105:DA188_J0.018-0.20.4310.976-1.2483.064
1106I_DT106:DA187_J0.015-0.1620.354-3.983-14.7143.464
1112I_DT112:DA181_J0.046-0.0650.2829.977-7.332-0.312
1117I_DT117:DA176_J-0.2320.0070.5221.134-15.908-4.511
1118I_DT118:DA175_J-0.003-0.3310.809-11.738-2.5677.297
1119I_DT119:DA174_J-0.109-0.0820.43-3.867-6.1131.913
1120I_DT120:DA173_J-0.1390.0160.312-8.519-5.287-1.821
1123I_DT123:DA170_J-0.1730.077-0.30731.3383.652-8.415
1128I_DT128:DA165_J0.124-0.2850.561-7.421-8.414-1.587
1130I_DT130:DA163_J-0.365-0.029-0.0188.068-33.924-9.928
1136I_DT136:DA157_J-0.15-0.0160.031-2.5114.384-9.205
1140I_DT140:DA153_J-0.079-0.2520.61-1.557-11.8313.079
1142I_DT142:DA151_J-0.227-0.0680.438.094-13.252-2.184
1143I_DT143:DA150_J0.075-0.0430.06415.156-15.6891.646

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.