A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
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NDB ID: NA2361  PDB ID: 3W98 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
11II_DA1DT2:DA291DT292_JJ-0.215-0.8513.432-5.4331.05229.882-1.845-0.7363.3862.01810.42430.379
14II_DA4DA5:DT288DT289_JJ-0.0320.0963.7340.6325.87738.497-0.6710.1363.7078.85-0.95238.931
15II_DA5DT6:DA287DT288_JJ0.420.1892.5110.393-3.93531.8960.88-0.7052.476-7.127-0.71232.134
17II_DA7DT8:DA285DT286_JJ-0.357-0.9573.167-3.963-1.6131.481-1.458-0.0613.231-2.9517.26331.763
111II_DA11DC12:DG281DT282_JJ0.353-0.6553.0652.2321.74933.162-1.417-0.2673.0443.057-3.90133.28
117II_DA17DG18:DC275DT276_JJ0.3780.2493.3162.2027.81533.735-0.814-0.2883.30713.229-3.72734.67
119II_DA19DT20:DA273DT274_JJ-0.841-0.5642.813-3.088-1.87837.794-0.6580.9492.894-2.8914.75437.96
124II_DA24DC25:DG268DT269_JJ0.2520.3473.508-5.2292.02933.2070.246-1.3483.4443.5189.06933.664
127II_DA27DA28:DT265DT266_JJ0.5120.0362.767-4.265-12.71531.6181.734-1.4312.483-22.1317.42334.278
128II_DA28DA29:DT264DT265_JJ-0.688-0.0353.416-1.398-7.68940.9510.8030.8133.389-10.8711.97741.658
129II_DA29DA30:DT263DT264_JJ0.173-0.2263.3855.63-2.01836.409-0.0730.523.381-3.203-8.93736.881
130II_DA30DG31:DC262DT263_JJ-0.071-0.0613.8631.3191.49833.804-0.3890.3723.8512.573-2.26533.862
135II_DA35DT36:DA257DT258_JJ0.276-1.323.044-1.121-2.93834.161-1.803-0.6343.133-4.9881.90334.301
141II_DA41DA42:DT251DT252_JJ-0.6430.3523.757-1.84622.58635.967-2.2790.6653.42332.8742.68742.311
142II_DA42DA43:DT250DT251_JJ-0.042-0.9783.011-7.1682.50332.186-2.106-1.0332.8724.43812.7133.046
143II_DA43DC44:DG249DT250_JJ0.676-1.0944.2068.9921.4731.743-2.2540.8084.1832.621-16.03232.993
151II_DA51DT52:DA241DT242_JJ-1.383-0.3623.2420.0896.30829.396-1.9672.6863.09512.253-0.17230.051
154II_DA54DA55:DT238DT239_JJ-0.460.343.005-12.969.95123.301-1.55-1.9822.79921.56428.08628.394
155II_DA55DA56:DT237DT238_JJ-0.149-0.5133.2213.759-4.96336.545-0.1771.8463.016-7.553-20.9439.271
156II_DA56DA57:DT236DT237_JJ0.7720.7313.4553.2580.11541.2661.021-0.7213.5050.163-4.61441.389
157II_DA57DG58:DC235DT236_JJ0.7882.0263.8765.373-16.28643.2394.091-0.53.037-21.137-6.97346.364
161II_DA61DT62:DA231DT232_JJ-0.426-1.13.4193.6685.87130.304-3.1891.5043.08511.051-6.90431.066
167II_DA67DG68:DC225DT226_JJ0.9860.9133.4754.939-1.6137.2051.644-0.8383.531-2.508-7.69537.553
172II_DA72DA73:DT220DT221_JJ-0.121-0.2143.597-0.917.18729.83-1.9510.0323.45413.7081.73530.678
173II_DA73DT74:DA219DT220_JJ-0.227-0.7492.9320.5296.48132.936-2.2280.4692.73611.294-0.92133.554
177II_DA77DG78:DC215DT216_JJ2.0170.433.6648.54-6.55833.7051.857-1.8293.896-10.967-14.28335.335
182II_DA82DA83:DT210DT211_JJ0.028-0.3343.7332.78611.5535.999-2.1910.3613.4618.091-4.36437.847
183II_DA83DC84:DG209DT210_JJ-0.058-0.2272.975-4.6771.69330.294-0.732-0.7262.9343.2138.87530.69
185II_DA85DT86:DA207DT208_JJ0.045-0.473.056-4.2421.77235.834-0.991-0.633.0052.8666.85936.118
195II_DA95DT96:DA197DT198_JJ-0.364-0.6473.106-4.9315.127.618-2.411-0.3212.96110.46610.11828.497
199II_DA99DG100:DC193DT194_JJ2.0910.9843.1264.291-9.30535.5552.753-2.7443.007-14.861-6.85336.956
1102II_DA102DG103:DC190DT191_JJ-0.7860.3523.335-9.26110.71632.55-1.112-0.1683.37618.08915.63235.421
1109II_DA109DA110:DT183DT184_JJ-0.266-0.4743.122-2.621-0.87230.866-0.7250.0133.145-1.6344.91230.987
1110II_DA110DA111:DT182DT183_JJ0.036-0.0243.164-4.983-5.12839.4990.531-0.6033.116-7.5137.340.116
1111II_DA111DT112:DA181DT182_JJ-0.489-0.9373.831.01-9.11933.6370.111.0023.927-15.405-1.70634.831
1113II_DA113DC114:DG179DT180_JJ-0.611-0.63.184-1.92211.19929.425-3.0880.7862.80721.0823.61831.498
1115II_DA115DC116:DG177DT178_JJ0.331-1.0993.408-2.6456.9930.25-3.383-1.1223.04513.1434.97431.139
1124II_DA124DG125:DC168DT169_JJ-0.18-0.4143.964-6.8342.94435.28-1.177-0.8863.8844.79111.12436.032
1126II_DA126DA127:DT166DT167_JJ-0.850.2242.999-2.604-9.0235.0491.5231.032.908-14.6554.2336.247
1127II_DA127DT128:DA165DT166_JJ0.042-0.8073.327-2.469-2.43736.364-0.943-0.4173.362-3.8953.94436.524
1133II_DA133DG134:DC159DT160_JJ-0.732-0.4382.922-8.7315.35627.383-1.937-0.2892.8810.84417.67929.202
1139II_DA139DT140:DA153DT154_JJ0.371-1.2923.7481.076-4.736.811-1.294-0.4143.886-7.404-1.69437.115
1141II_DA141DT142:DA151DT152_JJ0.032-0.983.3552.024.15932.253-2.4770.2973.2037.439-3.61332.574
13II_DC3DA4:DT289DG290_JJ-0.7161.6063.2563.035-4.09134.9573.2281.6112.985-6.766-5.01935.314
19II_DC9DC10:DG283DG284_JJ-0.3360.4693.1095.874.84733.1870.0651.4663.0438.35-10.11334.025
110II_DC10DA11:DT282DG283_JJ-0.884-0.1613.189-4.6015.88330.071-1.4280.7753.19711.1248.69930.964
112II_DC12DC13:DG280DG281_JJ0.121-1.2513.872-5.08423.0632.039-4.75-0.8192.4336.2727.99739.617
113II_DC13DT14:DA279DG280_JJ-0.6370.5123.483-4.86912.32629.245-1.5480.1753.47222.9829.0832.048
116II_DC16DA17:DT276DG277_JJ0.7262.753.4832.752-22.12145.5064.645-0.6762.058-26.789-3.33350.411
122II_DC22DT23:DA270DG271_JJ0.538-0.633.404-1.5735.67532.043-2.134-1.2393.21910.1732.8232.566
125II_DC25DC26:DG267DG268_JJ0.021-0.2113.414-1.9462.54735.508-0.729-0.3293.3854.1653.18335.647
126II_DC26DA27:DT266DG267_JJ-0.9941.7673.563-5.688-16.56147.4013.2920.7512.924-19.8276.8150.356
144II_DC44DT45:DA248DG249_JJ-0.259-0.153.305-4.0720.30127.823-0.381-0.4383.3070.6228.41128.115
147II_DC47DT48:DA245DG246_JJ0.5742.0933.2697.11-9.75944.7483.453-0.1552.833-12.55-9.14346.268
149II_DC49DC50:DG243DG244_JJ-0.2220.2092.7496.685-2.10836.8360.5561.0752.654-3.3-10.46337.474
150II_DC50DA51:DT242DG243_JJ0.264-0.1163.154-4.08513.8930.045-2.419-1.1142.77625.0467.36733.279
153II_DC53DA54:DT239DG240_JJ0.31-0.1434.1786.67726.10527.101-4.510.6212.96144.215-11.30938.038
160II_DC60DA61:DT232DG233_JJ0.1050.3383.2712.2821.99135.1630.2610.1663.2843.289-3.76935.289
166II_DC66DA67:DT226DG227_JJ-1.2791.2893.368-5.376-13.13340.2513.0991.2192.965-18.4067.53442.582
169II_DC69DT70:DA223DG224_JJ0.4841.1813.4148.938-13.14640.5192.8860.2222.95-18.161-12.34743.404
176II_DC76DA77:DT216DG217_JJ-1.0181.2953.099-1.848-15.52944.2462.7851.1452.568-19.8942.36746.797
179II_DC79DT80:DA213DG214_JJ1.2381.0883.3368.573-7.16840.1812.313-0.8063.288-10.197-12.19641.644
184II_DC84DA85:DT208DG209_JJ0.1110.273.6051.73510.7332.715-1.4140.1153.51818.426-2.9834.427
188II_DC88DC89:DG204DG205_JJ0.7320.864.032-4.394-0.64440.9431.308-1.623.923-0.9186.25941.173
189II_DC89DT90:DA203DG204_JJ-1.0351.7063.011-0.375-20.10540.3753.711.3271.997-27.1890.50744.917
1101II_DC101DA102:DT191DG192_JJ1.6010.8273.60812.9064.39838.5940.606-0.5943.9896.415-18.82540.845
1107II_DC107DC108:DG185DG186_JJ-1.1331.5023.457-3.7761.84731.42.3811.3173.6453.3936.93931.673
1108II_DC108DA109:DT184DG185_JJ0.3781.9493.1150.51-10.53347.7013.077-0.4232.657-12.841-0.62248.786
1114II_DC114DA115:DT178DG179_JJ-0.2880.2213.2672.818-0.0737.6070.3510.8083.237-0.109-4.36437.709
1116II_DC116DT117:DA176DG177_JJ-0.344-0.2123.2663.862-3.93236.5550.1941.0623.219-6.225-6.11536.954
1129II_DC129DT130:DA163DG164_JJ-0.8482.2042.9143.556-10.4144.2033.5931.3512.294-13.585-4.6445.484
1132II_DC132DA133:DT160DG161_JJ1.8350.0843.1597.98312.07335.458-1.444-1.7643.33618.882-12.48638.21
115II_DG15DC16:DG277DC278_JJ-0.6720.5533.132-3.5394.79534.8230.2170.5953.2277.945.8635.314
118II_DG18DA19:DT274DC275_JJ-0.058-0.6523.5250.413-4.31637.295-0.40.1493.575-6.721-0.64337.537
131II_DG31DT32:DA261DC262_JJ0.484-0.423.2193.0139.82829.362-2.618-0.3412.96118.682-5.72831.072
133II_DG33DT34:DA259DC260_JJ0.22-0.7753.443-1.5624.46330.123-2.394-0.743.2818.5212.98230.483
139II_DG39DG40:DC253DC254_JJ-0.348-0.0373.358-2.0612.90832.298-2.0940.2583.13222.1073.52834.777
140II_DG40DA41:DT252DC253_JJ-0.240.3653.0251.102-1.71835.4640.830.5422.996-2.817-1.80735.521
146II_DG46DC47:DG246DC247_JJ-0.324-0.4073.404-4.9820.13931.162-0.776-0.3753.4120.2589.19931.548
158II_DG58DG59:DC234DC235_JJ0.8750.8683.1593.0784.57439.1130.751-0.9363.2926.791-4.56939.484
159II_DG59DC60:DG233DC234_JJ-0.521-0.0733.392-10.455-2.39635.90.221-0.6473.404-3.78416.51437.418
163II_DG63DT64:DA229DC230_JJ-0.522-1.0113.2053.1146.57729.691-3.1451.5722.85212.598-5.96430.55
168II_DG68DC69:DG224DC225_JJ-1.1370.4133.86-6.222-11.50638.6022.1160.8133.725-16.8279.140.678
171II_DG71DA72:DT221DC222_JJ-0.4790.3172.748-10.3165.29733.91-0.148-0.5142.7888.7717.07935.783
178II_DG78DC79:DG214DC215_JJ-0.7641.0463.704-3.856-7.04339.9612.3730.6213.533-10.1815.57440.727
181II_DG81DA82:DT211DC212_JJ-0.842-0.0673.6614.189.80732.965-1.7812.1273.37516.746-7.13734.6
187II_DG87DC88:DG205DC206_JJ-1.8870.8023.34-13.678-20.14441.0682.7331.1653.105-26.13817.74947.474
194II_DG94DA95:DT198DC199_JJ-0.3220.4133.572-6.5636.80730.715-0.619-0.7343.57112.48412.03732.104
197II_DG97DG98:DC195DC196_JJ0.6660.4263.46812.82510.52431.017-1.071.063.4418.144-22.1135.079
198II_DG98DA99:DT194DC195_JJ-1.5241.4873.216-12.715-11.58347.2132.5910.8853.084-13.93315.29550.079
1100II_DG100DC101:DG192DC193_JJ-0.9950.4643.0593.173-0.31935.8480.7932.0272.959-0.517-5.14235.985
1103II_DG103DT104:DA189DC190_JJ0.192-1.1653.495-0.29411.01529.418-4.242-0.4112.8820.7940.55531.371
1121II_DG121DG122:DC171DC172_JJ-0.120.8053.123-2.027-0.02141.7321.131-0.0353.125-0.0292.84441.779
1122II_DG122DT123:DA170DC171_JJ-0.732-0.9073.1442.6692.5728.484-2.3722.042.9735.195-5.39628.719
1125II_DG125DA126:DT167DC168_JJ-0.229-0.5183.447-1.5664.81640.768-1.2860.1483.3746.8812.23841.068
1131II_DG131DC132:DG161DC162_JJ-0.5521.424.182-20.115-16.32741.2963.322-1.2883.356-20.8725.71248.448
1134II_DG134DG135:DC158DC159_JJ-0.207-1.6273.4597.4669.20628.895-4.7421.7762.69217.546-14.22931.184
1135II_DG135DT136:DA157DC158_JJ0.185-0.3843.6590.9622.58133.447-1.138-0.1443.6244.475-1.66733.557
1137II_DG137DG138:DC155DC156_JJ-0.519-0.3873.5432.359.12933.437-2.1371.2533.28515.488-3.98834.704
1138II_DG138DA139:DT154DC155_JJ-0.7120.4852.794-7.526-7.83437.2981.5550.282.729-11.94311.47338.794
1144II_DG144DA145:DT148DC149_JJ-0.424-0.3653.9696.29513.06340.401-2.0551.333.58818.22-8.7842.821
12II_DT2DC3:DG290DA291_JJ0.5510.2153.0664.714.55935.321-0.272-0.2533.1157.434-7.6835.905
16II_DT6DA7:DT286DA287_JJ-0.127-0.2363.9723.50511.0834.817-2.2060.7813.69917.91-5.66536.649
18II_DT8DC9:DG284DA285_JJ0.676-0.3533.545-4.209-2.68841.717-0.192-1.4143.479-3.7585.88542.001
114II_DT14DG15:DC278DA279_JJ-0.0942.3473.1326.163-15.27244.0184.0240.5512.213-19.581-7.90146.854
120II_DT20DT21:DA272DA273_JJ1.209-0.3443.518-0.554-11.11237.6210.938-1.8763.461-16.7870.83739.174
121II_DT21DC22:DG271DA272_JJ0.215-0.7363.7463.5917.93337.566-2.2220.1753.5312.119-5.48738.526
123II_DT23DA24:DT269DA270_JJ-0.630.5992.8338.5033.50538.8980.5331.762.6855.175-12.55639.93
132II_DT32DG33:DC260DA261_JJ0.3480.0753.509-4.57317.43635.59-2.076-1.0853.14626.5326.95939.763
134II_DT34DA35:DT258DA259_JJ-0.796-0.2633.2871.492-9.97639.7960.7261.3013.227-14.376-2.15141.004
136II_DT36DT37:DA256DA257_JJ-0.193-0.4763.1833.89-8.69332.6380.5640.9473.159-15.073-6.74433.963
137II_DT37DT38:DA255DA256_JJ-0.5370.2253.2674.597-1.30440.7710.4611.2613.182-1.864-6.57241.039
138II_DT38DG39:DC254DA255_JJ1.7572.4442.909-2.785-16.31639.2194.592-2.6341.684-23.0993.94342.442
145II_DT45DG46:DC247DA248_JJ0.3212.1173.28613.905-1.245.862.7080.7253.197-1.5-17.37647.827
148II_DT48DC49:DG244DA245_JJ-0.078-0.1683.357-5.3426.80936.794-1.16-0.5863.25510.6078.32237.764
152II_DT52DC53:DG240DA241_JJ1.033-0.1913.2464.601-4.44727.5140.667-1.0223.359-9.192-9.51228.234
162II_DT62DG63:DC230DA231_JJ0.3041.4713.422-5.0276.03437.0951.433-1.1613.549.3577.79537.889
164II_DT64DT65:DA228DA229_JJ-0.1570.0183.311-1.8567.43633.078-1.181-0.0333.24312.8473.20633.93
165II_DT65DC66:DG227DA228_JJ1.2320.2863.3350.4464.89535.513-0.257-1.9363.3587.978-0.72735.841
170II_DT70DG71:DC222DA223_JJ0.7830.3433.3848.54818.92229.892-2.380.0663.1632.249-14.56936.26
174II_DT74DT75:DA218DA219_JJ0.531-0.6413.466-0.4645.00531.879-2.081-1.0423.3219.0420.83932.263
175II_DT75DC76:DG217DA218_JJ-0.3390.183.29-0.5059.83331.428-1.390.513.20417.6180.90632.897
180II_DT80DG81:DC212DA213_JJ-0.240.6333.254-4.0952.48734.5390.676-0.2253.2964.1646.85634.86
186II_DT86DG87:DC206DA207_JJ0.6490.8123.7088.21914.2532.136-1.1480.373.77823.888-13.77736.003
190II_DT90DT91:DA202DA203_JJ-0.071-0.3843.1091.9326.19632.491-1.6540.432.97810.937-3.4133.116
191II_DT91DT92:DA201DA202_JJ0.4830.5123.182-2.4038.77133.287-0.484-1.1853.16914.9674.10134.473
192II_DT92DT93:DA200DA201_JJ-0.51-0.4553.8-3.02218.57428.586-4.1310.3232.99933.435.43934.116
193II_DT93DG94:DC199DA200_JJ0.669-0.1093.4098.14712.25628.149-2.6110.3783.16323.293-15.48431.695
196II_DT96DG97:DC196DA197_JJ-0.1570.4112.988-1.056-0.16536.480.6780.1172.989-0.2641.68636.495
1104II_DT104DT105:DA188DA189_JJ-0.005-0.5933.1592.2834.22532.67-1.7270.3783.0537.46-4.03133.011
1105II_DT105DT106:DA187DA188_JJ0.305-0.1783.3046.1085.98234.797-1.1630.3963.2359.82-10.02735.8
1106II_DT106DC107:DG186DA187_JJ1.6370.9963.23610.0751.00337.9161.358-1.1663.5651.511-15.17739.196
1112II_DT112DA113:DT180DA181_JJ0.147-0.6363.432-3.4426.55233.31-2.155-0.8143.22211.2585.91434.1
1117II_DT117DT118:DA175DA176_JJ0.461-0.1493.633-2.37-1.59338.811-0.01-1.013.602-2.3933.56138.912
1118II_DT118DT119:DA174DA175_JJ-0.5650.1153.6530.559-14.51836.042.1520.9283.355-22.378-0.86238.768
1119II_DT119DT120:DA173DA174_JJ0.1350.2323.651.585-13.40339.5631.892-0.0043.403-19.138-2.26441.714
1120II_DT120DG121:DC172DA173_JJ0.8481.5982.8143.006-4.0240.8012.646-0.9322.705-5.74-4.29241.096
1123II_DT123DA124:DT169DA170_JJ0.3160.6483.8045.48515.34733.674-1.4630.3913.74924.772-8.85437.307
1128II_DT128DC129:DG164DA165_JJ-0.251-0.9962.906-1.659-0.73334.665-1.5680.1942.934-1.232.78134.711
1130II_DT130DG131:DC162DA163_JJ0.3961.3393.5441.3288.39936.1770.833-0.4213.76313.3-2.10337.13
1136II_DT136DG137:DC156DA157_JJ0.9530.7233.145.95.46935.7030.399-0.7053.3218.782-9.47636.569
1140II_DT140DA141:DT152DA153_JJ-0.50.2432.693-0.2111.39536.9170.2290.7652.7022.2020.33436.943
1142II_DT142DT143:DA150DA151_JJ0.4550.4052.9647.2878.90331.477-0.6780.342.99415.767-12.90533.464
1143II_DT143DG144:DC149DA150_JJ-0.82-0.0572.767-11.6329.40634.194-1.197-0.0872.78215.13118.71337.233

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.