A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 9-Oct-2019 number of released structures: 10416
Search for released structures

NDB ID: NA2454  PDB ID: 3WA9 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11I_DA1:DT292_J1.228-0.119-0.431-21.138-3.522-1.465
14I_DA4:DT289_J0.863-0.146-0.16110.834-15.0990.259
15I_DA5:DT288_J1.095-0.2180.047.596-12.928-1.321
17I_DA7:DT286_J1.146-0.1770.0396.395-13.839-2.775
111I_DA11:DT282_J-0.642-0.5640.2014.926-10.532-8.155
117I_DA17:DT276_J0.691-0.0740.26513.697-15.505-4.466
119I_DA19:DT274_J0.918-0.144-0.0455.165-15.460.123
124I_DA24:DT269_J-0.354-0.029-0.192-32.5773.458-4.672
126I_DA27:DT266_J1.234-0.199-0.145-0.524-22.411-2.861
127I_DA28:DT265_J-0.063-0.187-0.353-1.075-19.517-2.154
128I_DA29:DT264_J1.182-0.2190.629-1.818-16.749-7.469
129I_DA30:DT263_J1.322-0.1580.4432.467-7.56-9.027
134I_DA35:DT258_J0.616-0.0340.189-25.954-10.557-4.135
139I_DA41:DT252_J1.568-0.3460.97812.332-23.248-17.654
140I_DA42:DT251_J0.959-0.2981.0261.089-23.789-17.612
141I_DA43:DT250_J0.315-0.1891.0074.552-11.418-9.742
149I_DA51:DT242_J0.877-0.0870.07-21.152-5.854-2.952
151I_DA54:DT239_J-1.0830.105-0.13818.713-29.5222.313
152I_DA55:DT238_J-0.105-0.231-0.417.385-31.1061.924
153I_DA57:DT236_J0.879-0.3511.21111.496-29.528-22.352
157I_DA61:DT232_J0.923-0.172-0.442-8.957-19.309-0.525
163I_DA67:DT226_J0.329-0.135-0.115-1.547-33.084-3.33
168I_DA72:DT221_J0.362-0.0780.1140.992-10.122-1.575
169I_DA73:DT220_J1.131-0.252-0.289-0.182-14.74-2.614
173I_DA77:DT216_J0.499-0.0990.1123.201-26.915-5.03
178I_DA82:DT211_J0.303-0.1560.1428.966-14.4010.015
179I_DA83:DT210_J0.538-0.174-0.317-0.333-8.31.452
181I_DA85:DT208_J0.333-0.1050.1130.183-18.2330.48
191I_DA95:DT198_J0.37-0.0750.001-4.543-1.361-6.307
195I_DA99:DT194_J1.126-0.246-0.001-0.352-33.356-9.757
198I_DA102:DT191_J-0.102-0.155-0.284-2.95-5.869-2.215
1105I_DA109:DT184_J0.412-0.0810.47810.132-12.991-5.526
1106I_DA110:DT183_J1.214-0.2370.08-7.483-13.092-4.356
1107I_DA111:DT182_J1.412-0.3770.58-6.963-7.492-3.25
1109I_DA113:DT180_J1.179-0.3361.23715.873-10.832-10.116
1111I_DA115:DT178_J0.303-0.19-0.854-4.147-14.389-0.739
1119I_DA124:DT169_J0.557-0.063-0.0614.566-29.265-8.281
1121I_DA126:DT167_J0.334-0.416-0.029-18.394-13.997-13.652
1122I_DA127:DT166_J1.32-0.3540.8232.415-5.787-1.088
1128I_DA133:DT160_J1.12-0.1830.0223.885-23.591-3.685
1134I_DA139:DT154_J1.175-0.2070.27.36-10.245-1.648
1136I_DA141:DT152_J1.177-0.2720.25-3.182-18.886-4.524
1140I_DA145:DT148_J1.428-0.3460.827-8.801-22.853-13.96
13I_DC3:DG290_J-1.8740.338-0.9717.314-13.474-10.27
19I_DC9:DG284_J-0.3560.1480.755-17.605-17.75410.193
110I_DC10:DG283_J-0.026-0.066-0.2474.684-14.117-0.725
112I_DC12:DG281_J-0.9250.295-0.0969.674-8.349-5.893
113I_DC13:DG280_J-0.371-0.212-0.022-4.132-18.157-3.296
116I_DC16:DG277_J0.262-0.113-0.65732.412-37.6962.966
122I_DC22:DG271_J-0.179-0.1910.886-18.206-15.568-7.166
125I_DC25:DG267_J0.817-0.034-1.009-16.06322.138-35.115
142I_DC44:DG249_J-0.5810.3740.542-1.133-2.666.766
145I_DC47:DG246_J-0.4030.438-1.04320.95-38.88219.628
147I_DC49:DG244_J-0.419-0.1280.279-4.974-23.215-1.987
148I_DC50:DG243_J-2.3550.5940.379-20.276-26.7036.357
150I_DC53:DG240_J-0.3270.3750.00721.596-23.53413.843
156I_DC60:DG233_J-0.132-0.0720.272-0.9323.461-0.695
162I_DC66:DG227_J-0.746-0.257-0.45414.471-10.229-4.74
165I_DC69:DG224_J-0.5770.1560.593-2.231-22.4881.159
172I_DC76:DG217_J-0.487-0.155-0.0122.221-2.546-1.127
175I_DC79:DG214_J-0.128-0.3450.131-0.522-33.467-4.307
180I_DC84:DG209_J-0.02-0.22-0.0863.731-10.2796.648
184I_DC88:DG205_J-0.2680.0040.7265.87-36.8021.555
185I_DC89:DG204_J-0.151-0.1140.735-17.934-7.483-3.75
197I_DC101:DG192_J-0.532-0.010.3015.011-15.909-0.97
1103I_DC107:DG186_J-0.271-0.124-0.576-0.445-10.2811.308
1104I_DC108:DG185_J-1.1590.6080.4486.488-16.97-0.339
1110I_DC114:DG179_J0.125-0.1720.416-4.881-8.469-3.339
1112I_DC116:DG177_J-0.207-0.43-1.68930.525-23.559-3.123
1124I_DC129:DG164_J-0.676-0.3391.895-21.296-6.977-4.214
1127I_DC132:DG161_J-1.172-0.044-0.2963.512-24.9634.986
115I_DG15:DC278_J0.4250.241-0.0084.39-12.8125.986
118I_DG18:DC275_J0.187-0.0860.84412.223-8.637-1.714
130I_DG31:DC262_J0.105-0.398-0.2359.866-9.571-14.151
132I_DG33:DC260_J2.3850.2860.41812.393-19.69814.038
138I_DG40:DC253_J-0.19-0.2311.12113.847-8.218-3.611
144I_DG46:DC247_J-0.5660.465-0.219-5.882-12.47624.754
154I_DG58:DC235_J0.12-0.1690.425-14.223-25.701-5.122
155I_DG59:DC234_J-0.509-0.194-0.1230.42-0.991-2.047
159I_DG63:DC230_J0.031-0.118-0.475-15.721-13.025-0.451
164I_DG68:DC225_J0.129-0.124-0.146-5.25-10.492-0.998
167I_DG71:DC222_J0.207-0.195-0.25-4.961-8.1849.285
174I_DG78:DC215_J0.537-0.2230.2055.219-2.3124.881
177I_DG81:DC212_J0.25-0.027-0.261-4.448-7.9480.522
183I_DG87:DC206_J0.07-0.13-0.047-0.716-4.0088.352
190I_DG94:DC199_J0.591-0.292-0.303-6.09-10.065-3.776
193I_DG97:DC196_J0.001-0.0610.3099.291-15.284-1.87
194I_DG98:DC195_J1.5490.2730.144.742-8.84711.926
196I_DG100:DC193_J0.283-0.3051.21314.69-4.5991.858
199I_DG103:DC190_J0.960.523-0.219-4.219-5.613-3.208
1116I_DG121:DC172_J1.2680.6240.239-0.947-28.114-0.014
1117I_DG122:DC171_J0.6980.4421.08127.01410.402-20.425
1120I_DG125:DC168_J0.602-0.012-0.382-17.265-28.321-19.924
1126I_DG131:DC162_J0.297-0.47-0.523-16.352-23.819-4.801
1129I_DG134:DC159_J0.498-0.251-0.1081.632-5.054-12.134
1130I_DG135:DC158_J0.323-0.477-0.008-13.763-20.906-1.248
1132I_DG137:DC156_J0.4950.049-0.488-3.322-13.1695.207
1133I_DG138:DC155_J-0.749-0.273-0.001-9.738-9.571-2.384
1139I_DG144:DC149_J1.432-0.144-0.372-9.636-30.703-10.405
12I_DT2:DA291_J0.096-0.123-0.397-1.601-13.7580.182
16I_DT6:DA287_J-0.3220.007-0.24219.529-11.72-5.623
18I_DT8:DA285_J-0.909-0.231-0.3165.693-17.2971.643
114I_DT14:DA279_J-0.055-0.131-0.229-1.883-20.174-3.698
120I_DT20:DA273_J-1.166-0.233-0.46212.66-23.231.716
121I_DT21:DA272_J-0.11-0.18-0.7162.33-30.0610.32
123I_DT23:DA270_J-0.198-0.1080.418-21.649-20.433-4.703
131I_DT32:DA261_J0.305-0.140.584-4.622-23.33-2.923
133I_DT34:DA259_J-1.051-0.140.67-12.294-24.213-12.326
135I_DT36:DA257_J-1.061-0.2230.828-14.468-3.169-3.084
136I_DT37:DA256_J-0.749-0.2641.117-17.05-11.185-3.096
137I_DT38:DA255_J0.150.5351.365-13.124-39.7078.258
143I_DT45:DA248_J-0.985-0.1820.418-5.012-27.422-12.538
146I_DT48:DA245_J-0.879-0.17-0.2520.145-19.571-3.164
158I_DT62:DA231_J-0.018-0.1180.166-13.624-26.829-8.091
160I_DT64:DA229_J-0.993-0.274-0.5752.298-20.6641.947
161I_DT65:DA228_J-0.764-0.164-0.5577.961-17.4470.343
166I_DT70:DA223_J-0.287-0.158-0.314-7.539-9.201-1.92
170I_DT74:DA219_J-0.175-0.118-0.059-3.533-15.65-1.8
171I_DT75:DA218_J-0.905-0.204-0.1642.245-11.467-1.764
176I_DT80:DA213_J-0.305-0.118-0.16-8.52-7.423-3.721
182I_DT86:DA207_J-0.556-0.12-0.193-0.289-11.228-0.563
186I_DT90:DA203_J-0.15-0.1560.544-12.494-20.906-7.864
187I_DT91:DA202_J-0.161-0.117-0.2623.432-12.611-1.293
188I_DT92:DA201_J-0.677-0.119-0.3650.443-5.869-1.593
189I_DT93:DA200_J-0.326-0.182-0.634-3.032-16.336-1.156
192I_DT96:DA197_J-0.371-0.2110.74-5.928-5.05-1.135
1100I_DT104:DA189_J-0.131-0.1820.742-8.81-17.427-9.551
1101I_DT105:DA188_J-0.447-0.2571.069-10.276-12.468-5.458
1102I_DT106:DA187_J-0.496-0.092-0.3581.389-28.006-3.44
1108I_DT112:DA181_J-0.738-0.0430.294-7.63-11.718-9.043
1113I_DT117:DA176_J-0.943-0.121-0.15-1.69-21.131-3.966
1114I_DT118:DA175_J-0.663-0.1530.737-5.224-15.954-10.496
1115I_DT119:DA174_J-1.242-0.3091.001-10.579-10.526-7.282
1118I_DT123:DA170_J-0.5510.014-0.03532.593-3.379-6.222
1123I_DT128:DA165_J-0.199-0.1310.2671.024-30.266-11.916
1125I_DT130:DA163_J-1.049-0.2480.137-9.828-31.239-8.027
1131I_DT136:DA157_J-1.354-0.314-0.152-1.935-12.348-4.16
1135I_DT140:DA153_J-1.442-0.4150.382-0.198-6.5410.348
1137I_DT142:DA151_J-0.034-0.173-0.228-3.216-13.762-1.323
1138I_DT143:DA150_J-0.861-0.121-0.3737.588-13.938-1.095
1141I_DT146:DA147_J-0.768-0.0020.06112.367-24.374-18.603

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.