A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
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NDB ID: NA2733  PDB ID: 3WKJ 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11I_DA1:DT292_J0.006-0.136-0.534-12.56716.623-2.528
14I_DA4:DT289_J-0.002-0.054-0.0386.26-15.2071.719
15I_DA5:DT288_J0.165-0.079-0.3025.446-20.2793.492
17I_DA7:DT286_J0.172-0.0710.1873.216-10.7760.551
111I_DA11:DT282_J0.2320.116-0.297.111-2.694-11.587
117I_DA17:DT276_J0.023-0.1621.08216.124-8.281.794
119I_DA19:DT274_J-0.026-0.1360.1855.703-12.084.878
124I_DA24:DT269_J0.032-0.1570.249-8.467-11.5322.105
127I_DA27:DT266_J0.260.0450.1562.323-14.998-4.601
128I_DA28:DT265_J0.168-0.1030.269.326.0280.569
129I_DA29:DT264_J0.2880.0940.5468.542-10.39-7.48
130I_DA30:DT263_J0.121-0.0340.137.74-7.775-4.011
135I_DA35:DT258_J0.0340.0070.099-18.7830.375-1.382
141I_DA41:DT252_J0.055-0.2090.607-0.426-12.3372.626
142I_DA42:DT251_J-0.022-0.3061.170.431-0.036-0.641
143I_DA43:DT250_J-0.005-0.2060.3376.702-8.7022.309
151I_DA51:DT242_J0.073-0.0490.19-11.483-16.2440.362
154I_DA54:DT239_J-0.099-0.161-0.892-10.107-11.6423.691
155I_DA55:DT238_J-0.163-0.13-0.1016.855-24.162.348
156I_DA56:DT237_J-0.0030.105-0.5582.425-29.464-5.368
157I_DA57:DT236_J0.1350.0680.16611.224-22.788-2.881
161I_DA61:DT232_J0.216-0.2260.595-7.709-4.028-0.64
167I_DA67:DT226_J0.155-0.0210.327-0.701-30.64-8.417
172I_DA72:DT221_J-0.039-0.078-0.097-1.078-12.0872.873
173I_DA73:DT220_J0.231-0.0360.0172.261-10.647-0.016
177I_DA77:DT216_J0.1550.136-0.1030.596-32.159-7.201
182I_DA82:DT211_J0.027-0.0360.23911.549-5.3780.742
183I_DA83:DT210_J0.164-0.102-0.6493.463-8.0032.398
185I_DA85:DT208_J0.13-0.0510.256-4.729-4.1811.498
195I_DA95:DT198_J0.07-0.137-0.624-1.9143.490.787
199I_DA99:DT194_J0.357-0.2110.768-2.379-25.898-12.692
1102I_DA102:DT191_J0.034-0.04-0.889-19.771-2.4130.797
1109I_DA109:DT184_J-0.07-0.076-0.106-10.09-4.4570.829
1110I_DA110:DT183_J0.066-0.0550.391.678-12.0691.18
1111I_DA111:DT182_J0.156-0.1990.7056.939-6.6851.415
1113I_DA113:DT180_J-0.247-0.278-1.272-31.956-15.4389.104
1115I_DA115:DT178_J0.028-0.116-0.1194.268-11.6367.594
1124I_DA124:DT169_J0.1550.034-0.23224.237-14.44-4.93
1126I_DA126:DT167_J0.073-0.064-0.196-12.79-19.581-0.642
1127I_DA127:DT166_J0.159-0.055-0.133-19.623-8.144-0.95
1133I_DA133:DT160_J0.1750.084-0.225.225-14.2042.69
1139I_DA139:DT154_J0.2570.130.30710.666-8.784-3.115
1141I_DA141:DT152_J0.289-0.2240.5462.378-13.83-0.584
1145I_DA145:DT148_J0.021-0.105-0.067-9.914-19.759-0.709
13I_DC3:DG290_J0.284-0.057-0.82817.051-8.4821.116
19I_DC9:DG284_J0.047-0.097-0.557-7.745-12.7145.761
110I_DC10:DG283_J0.02-0.324-1.0353.955-0.646-1.171
112I_DC12:DG281_J0.013-0.031-0.4965.642-2.339-5.448
113I_DC13:DG280_J0.0250.0260.657-21.201-5.3640.843
116I_DC16:DG277_J0.227-0.050.03416.431-13.433-3.409
122I_DC22:DG271_J0.015-0.0210.373-13.574-16.171-1.548
125I_DC25:DG268_J-0.012-0.2821.614-20.8531.7761.403
126I_DC26:DG267_J0.150.0390.1229.071-9.5111.431
144I_DC44:DG249_J0.256-0.107-0.93816.837-17.7885.846
147I_DC47:DG246_J-0.1-0.1750.4786.38-20.536-4.153
149I_DC49:DG244_J0.0570.0030.059-3.382-13.54-0.483
150I_DC50:DG243_J-0.0140.040.092-8.084-10.185-2.72
153I_DC53:DG240_J0.169-0.297-1.1428.638-18.7526.318
160I_DC60:DG233_J0.0730.0340.027-7.066-1.671-0.736
166I_DC66:DG227_J-0.0030.065-0.50812.15-5.403-1.953
169I_DC69:DG224_J0.0480.0440.2757.041-14.55-3.381
176I_DC76:DG217_J0.1860.0250.315-5.1082.7850.719
179I_DC79:DG214_J0.033-0.1040.331-2.144-32.534-2.625
184I_DC84:DG209_J0.147-0.124-0.4585.9960.6753.508
188I_DC88:DG205_J0.022-0.0460.883-1.278-23.26-6.404
189I_DC89:DG204_J0.183-0.0880.819-17.96812.254-1.455
1101I_DC101:DG192_J0.0730.1030.2793.142-19.170.985
1107I_DC107:DG186_J0.173-0.124-0.524-8.438-0.8632.818
1108I_DC108:DG185_J-0.106-0.0220.555-1.529-16.347-2.281
1114I_DC114:DG179_J-0.057-0.086-0.469-3.899-8.734-2.622
1116I_DC116:DG177_J0.142-0.049-0.66911.739-13.3630.381
1129I_DC129:DG164_J0.145-0.3261.667-11.5734.9844.715
1132I_DC132:DG161_J-0.042-0.061-0.2242.082-22.201-0.287
115I_DG15:DC278_J-0.0520.001-0.023-7.592-16.106-3.435
118I_DG18:DC275_J0.0370.0280.43719.309-15.8062.714
131I_DG31:DC262_J-0.16-0.1250.2-2.431-11.274-2.371
133I_DG33:DC260_J0.01-0.003-0.238-1.116-14.375-0.445
139I_DG39:DC254_J-0.2620.118-0.788-24.901-16.2734.105
140I_DG40:DC253_J-0.122-0.080.4631.029-17.713-0.91
146I_DG46:DC247_J-0.275-0.0550.3489.827-4.4193.881
158I_DG58:DC235_J0.142-0.1690.8919.812-16.054-8.808
159I_DG59:DC234_J-0.229-0.001-0.422-5.041-11.6144.098
163I_DG63:DC230_J-0.045-0.102-0.571-0.826-4.2941.384
168I_DG68:DC225_J-0.251-0.120.5329.09216.764-1.452
171I_DG71:DC222_J-0.204-0.0010.5172.475-1.8895.517
178I_DG78:DC215_J-0.09-0.0460.3088.6743.2821.223
181I_DG81:DC212_J-0.3240.029-0.058-6.567-1.2164.295
187I_DG87:DC206_J-0.281-0.1450.28-5.29714.9633.464
194I_DG94:DC199_J-0.164-0.336-1.474-15.182-6.0121.084
197I_DG97:DC196_J-0.1050.0730.1911.263-15.9550.351
198I_DG98:DC195_J-0.239-0.0750.3528.2912.2375.633
1100I_DG100:DC193_J-0.133-0.1911.06713.15713.9775.118
1103I_DG103:DC190_J-0.0330.0280.044-6.625-1.1551.598
1121I_DG121:DC172_J-0.0570.002-0.077.4093.848-2.7
1122I_DG122:DC171_J-0.07-0.0380.37421.38212.885-5.389
1125I_DG125:DC168_J0.015-0.042-0.6430.443-8.8280.327
1131I_DG131:DC162_J-0.193-0.02-0.79-26.219-25.4236.463
1134I_DG134:DC159_J-0.099-0.239-0.8230.152-10.150.844
1135I_DG135:DC158_J-0.017-0.235-0.883-17.331-5.482-0.916
1137I_DG137:DC156_J-0.317-0.039-0.5663.422-12.1885.005
1138I_DG138:DC155_J-0.28-0.027-0.439-8.873-14.9084.145
1144I_DG144:DC149_J0.048-0.129-0.1248.613-16.9811.512
12I_DT2:DA291_J-0.0160.024-0.483.39-2.171-3.98
16I_DT6:DA287_J-0.003-0.1830.02713.334-6.671-1.68
18I_DT8:DA285_J0.072-0.078-0.4228.916-12.9530.102
114I_DT14:DA279_J-0.1570.050.127-8.151-24.916-3.934
120I_DT20:DA273_J-0.004-0.026-0.3277.96-16.5137.423
121I_DT21:DA272_J0.163-0.154-0.6152.788-19.5396.027
123I_DT23:DA270_J-0.11-0.1250.745-11.615-9.7980.818
132I_DT32:DA261_J-0.040.027-0.1770.7830.337-4.304
134I_DT34:DA259_J-0.001-0.0660.0970.69-14.891-2.311
136I_DT36:DA257_J-0.141-0.1650.906-9.972-5.519-0.333
137I_DT37:DA256_J-0.411-0.2051.439-21.311-11.594-8.75
138I_DT38:DA255_J-0.4420.0490.366-27.535-33.7-3.833
145I_DT45:DA248_J-0.237-0.1330.503-1.29-28.163-4.758
148I_DT48:DA245_J0.007-0.0260.3130.1063.935-2.513
152I_DT52:DA241_J-0.0990.023-0.028-1.137-18.013-12.311
162I_DT62:DA231_J-0.123-0.0110.014-2.55-6.886-4.812
164I_DT64:DA229_J-0.061-0.1160.158-0.899-5.5132.368
165I_DT65:DA228_J0.073-0.062-0.1878.466-3.7350.168
170I_DT70:DA223_J-0.0810.013-0.472-5.82-0.47-3.312
174I_DT74:DA219_J-0.022-0.026-0.497-1.76-12.831.886
175I_DT75:DA218_J-0.0380.023-0.229-0.378-12.6543.734
180I_DT80:DA213_J-0.142-0.034-0.515-4.9166.989-6.954
186I_DT86:DA207_J-0.0680.0290.0031.162-3.031-0.029
190I_DT90:DA203_J-0.2780.0540.346-7.193-24.308-4.506
191I_DT91:DA202_J0.228-0.039-0.85312.672-17.0866.675
192I_DT92:DA201_J-0.004-0.14-0.7714.285-1.8423.427
193I_DT93:DA200_J0.103-0.305-1.0325.448-8.6444.732
196I_DT96:DA197_J0.061-0.084-0.28611.268-4.5670.659
1104I_DT104:DA189_J-0.007-0.0320.096-2.626-6.9461.471
1105I_DT105:DA188_J0.033-0.0920.0682.701-7.9160.145
1106I_DT106:DA187_J-0.1170.0430.005-12.703-22.576-3.813
1112I_DT112:DA181_J-0.058-0.063-0.3281.385-9.7340.369
1117I_DT117:DA176_J-0.040.0090.285-5.511-8.8290.873
1118I_DT118:DA175_J-0.103-0.0340.794-14.41-5.49-3.947
1119I_DT119:DA174_J-0.227-0.0730.461-7.414-16.109-1.931
1120I_DT120:DA173_J0.078-0.13-0.0938.846-10.2383.425
1123I_DT123:DA170_J-0.064-0.015-1.36333.182-11.995-7.638
1128I_DT128:DA165_J0.028-0.0820.288-5.659-22.869-0.849
1130I_DT130:DA163_J-0.2790.0680.136-11.757-24.588-6.968
1136I_DT136:DA157_J-0.006-0.038-0.0087.403-8.594-2.218
1140I_DT140:DA153_J-0.253-0.2590.372-5.357-3.3152.299
1142I_DT142:DA151_J0.099-0.06-0.008-1.856-10.7961.047
1143I_DT143:DA150_J0.073-0.105-0.20717.014-11.186-3.876

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.