A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
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NDB ID: NA2733  PDB ID: 3WKJ 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
11II_DA1DT2:DA291DT292_JJ-0.898-0.8653.236-0.706-6.68933.788-0.4011.4063.359-11.371.234.432
14II_DA4DA5:DT288DT289_JJ-0.052-0.0553.3521.0843.34337.702-0.5240.2233.3335.16-1.67337.86
15II_DA5DT6:DA287DT288_JJ0.351-0.2653.012-2.434.09233.311-1.067-0.9682.9277.0944.21233.64
17II_DA7DT8:DA285DT286_JJ-0.346-1.0043.0792.228-1.88233.621-1.4410.9373.1-3.247-3.84333.744
111II_DA11DC12:DG281DT282_JJ0.055-0.9893.391-1.7167.69430.378-3.278-0.4263.04714.383.20731.361
117II_DA17DG18:DC275DT276_JJ0.3320.0173.3326.7054.41631.035-0.7890.6443.3018.084-12.27532.032
119II_DA19DT20:DA273DT274_JJ-0.07-0.893.2591.47-2.6234.049-1.0970.3533.31-4.464-2.50534.177
124II_DA24DC25:DG268DT269_JJ0.3040.5133.852-10.14-3.19431.6811.508-2.4783.524-5.65517.95333.374
127II_DA27DA28:DT265DT266_JJ0.082-0.0553.119-7.152-0.94432.3580.054-1.293.032-1.66812.63833.132
128II_DA28DA29:DT264DT265_JJ-1.008-0.0713.395-4.809-15.24742.2661.3650.8553.32-20.2956.40145.059
129II_DA29DA30:DT263DT264_JJ-0.259-0.4823.250.253-0.19236.958-0.7350.4433.25-0.303-0.39836.959
130II_DA30DG31:DC262DT263_JJ0.017-0.7713.797-0.492.84234.662-1.79-0.1153.7234.760.82134.778
135II_DA35DT36:DA257DT258_JJ0.327-1.3023.182-1.294-4.65933.756-1.482-0.7633.312-7.9732.21534.091
141II_DA41DA42:DT251DT252_JJ-0.357-0.1613.192-8.09910.78434.521-1.682-0.5113.01617.37413.04836.987
142II_DA42DA43:DT250DT251_JJ-0.115-0.6813.3516.696-0.1931.823-1.1831.4043.264-0.342-12.04632.503
143II_DA43DC44:DG249DT250_JJ0.493-0.2113.08112.4995.67831.011-1.2491.1052.97210.027-22.07133.846
151II_DA51DT52:DA241DT242_JJ-0.469-0.393.113-2.8871.88130.056-1.1110.343.1133.6115.54330.249
154II_DA54DA55:DT238DT239_JJ-0.4451.1312.778-8.7172.11125.4011.949-1.0252.8544.6219.08126.913
155II_DA55DA56:DT237DT238_JJ-0.8170.1753.5465.97213.20237.85-1.3461.9063.26719.501-8.82240.433
156II_DA56DA57:DT236DT237_JJ0.690.5373.054-3.243-11.90641.9071.761-1.2122.751-16.2294.42143.607
157II_DA57DG58:DC235DT236_JJ0.7420.8213.331-3.195-7.09834.0532.426-1.7133.024-11.9275.36934.905
161II_DA61DT62:DA231DT232_JJ-0.307-1.1313.1584.1261.69231.97-2.321.2493.0343.054-7.44632.272
167II_DA67DG68:DC225DT226_JJ1.6731.0323.083-1.379-16.14134.8983.326-2.6952.335-25.2982.16238.369
172II_DA72DA73:DT220DT221_JJ-0.161-0.233.30.0874.77233.24-1.1840.2923.2368.288-0.15233.571
173II_DA73DT74:DA219DT220_JJ-0.09-0.8393.3924.54713.29527.728-4.0821.0272.67425.753-8.80731.023
177II_DA77DG78:DC215DT216_JJ1.6290.6323.114-0.595-4.18633.5731.719-2.8892.987-7.2111.02633.831
182II_DA82DA83:DT210DT211_JJ0.281-0.2613.5895.6389.06733.995-1.8740.4413.41215.053-9.36135.585
183II_DA83DC84:DG209DT210_JJ0.009-0.0973.222-2.2475.93232.105-1.179-0.3983.14610.5964.01532.709
185II_DA85DT86:DA207DT208_JJ0.108-0.9783.1423.5543.53533.117-2.250.3663.0196.157-6.19133.484
195II_DA95DT96:DA197DT198_JJ-0.422-1.0053.1561.1690.83729.064-2.1751.0853.1081.667-2.32729.099
199II_DA99DG100:DC193DT194_JJ2.3860.4652.889-0.043-17.50832.6822.75-3.7682.347-28.6920.07136.963
1102II_DA102DG103:DC190DT191_JJ-0.4360.2513.097-12.1234.7430.126-0.357-1.2763.0478.6322.07332.758
1109II_DA109DA110:DT183DT184_JJ0.071-0.3493.035-2.1294.11531.179-1.349-0.4962.9557.6033.93431.513
1110II_DA110DA111:DT182DT183_JJ-0.1340.0042.937-5.4390.32439.679-0.027-0.3652.9290.4747.96840.036
1111II_DA111DT112:DA181DT182_JJ-0.511-0.8443.5465.132-11.30132.8640.4951.7093.521-19.146-8.69535.07
1113II_DA113DC114:DG179DT180_JJ-0.914-0.1872.764-8.975-0.24828.713-0.3160.1282.912-0.48517.56430.056
1115II_DA115DC116:DG177DT178_JJ0.163-1.0973.1314.469-0.36127.705-2.1810.6783.132-0.748-9.25728.059
1124II_DA124DG125:DC168DT169_JJ-0.263-0.6644.054-4.23511.91135.785-2.879-0.2563.66318.686.64237.883
1126II_DA126DA127:DT166DT167_JJ-0.378-0.0913.157-2.3794.04137.325-0.6490.2873.1486.2843.69937.608
1127II_DA127DT128:DA165DT166_JJ0.164-0.7063.2086.165-13.69935.9570.6520.5243.241-21.094-9.49238.873
1133II_DA133DG134:DC159DT160_JJ-0.314-0.5483.482.3219.18628.732-2.9831.0893.12617.907-4.52530.223
1139II_DA139DT140:DA153DT154_JJ0.201-1.4023.799-2.498-9.59136.831-0.671-0.6934.006-14.8533.86938.096
1141II_DA141DT142:DA151DT152_JJ0.138-0.6513.3185.1272.13535.52-1.3630.5163.2623.473-8.34135.938
13II_DC3DA4:DT289DG290_JJ-0.9111.1953.69-6.0697.31635.1570.7030.4553.9511.8479.82836.38
19II_DC9DC10:DG283DG284_JJ0.0361.0892.8972.4517.61731.9610.7190.3233.06313.569-4.36532.922
110II_DC10DA11:DT282DG283_JJ-0.9530.5153.451-7.5717.08432.181-0.3820.2833.60612.38413.23633.768
112II_DC12DC13:DG280DG281_JJ0.455-0.9444.062-2.99419.332.817-4.318-1.1433.01930.9824.80638.051
113II_DC13DT14:DA279DG280_JJ-1.0250.5093.124.2513.30227.558-1.5572.7312.87225.921-8.28130.833
116II_DC16DA17:DT276DG277_JJ0.9642.9983.17-1.104-21.96449.5194.388-1.1181.766-24.8581.2553.9
122II_DC22DT23:DA270DG271_JJ-0.057-0.5933.3630.2847.57928.167-2.8410.1763.115.227-0.5729.15
125II_DC25DC26:DG267DG268_JJ-0.3560.162.5629.4810.76236.1310.1721.5232.3981.203-14.96937.322
126II_DC26DA27:DT266DG267_JJ-0.3512.1413.567-5.196-13.19747.3943.5630.0272.929-16.0056.30149.353
144II_DC44DT45:DA248DG249_JJ0.0340.2123.867-6.9798.11830.093-1.375-1.5753.69915.0512.93831.899
147II_DC47DT48:DA245DG246_JJ1.2081.1613.4725.4981.16938.3461.594-1.0863.6371.769-8.31638.741
149II_DC49DC50:DG243DG244_JJ-0.445-0.0963.3840.3273.37234.561-0.6930.7973.3565.659-0.5534.722
150II_DC50DA51:DT242DG243_JJ-0.359-0.1683.405-2.94715.09629.997-2.8550.123.00327.0445.2833.629
153II_DC53DA54:DT239DG240_JJ0.560.7453.8544.02725.29922.655-4.006-0.1163.19548.564-7.72934.072
160II_DC60DA61:DT232DG233_JJ-0.512-0.0073.277-6.9661.8635.97-0.27-0.1583.3112.97411.14336.662
166II_DC66DA67:DT226DG227_JJ-1.0711.4783.72-5.714-3.26744.0572.2940.8133.711-4.3267.56744.521
169II_DC69DT70:DA223DG224_JJ0.7921.2053.76110.318-4.64840.6512.2330.1353.692-6.538-14.51542.133
176II_DC76DA77:DT216DG217_JJ-1.0321.9033.3092.012-10.6144.2923.3381.52.759-13.829-2.62245.525
179II_DC79DT80:DA213DG214_JJ1.2661.3663.2246.921-5.63941.9622.426-1.053.183-7.769-9.53542.86
184II_DC84DA85:DT208DG209_JJ-0.2370.2733.791-3.7346.2333.242-0.699-0.2933.78210.7316.43234.004
188II_DC88DC89:DG204DG205_JJ0.9721.3133.9840.331-6.66739.9042.789-1.3623.734-9.686-0.48140.436
189II_DC89DT90:DA203DG204_JJ-1.1021.0323.0981.649-11.10338.0182.6941.8022.657-16.607-2.46739.581
1101II_DC101DA102:DT191DG192_JJ0.6030.3823.9018.7986.44741.694-0.2570.2393.9578.876-12.11343.036
1107II_DC107DC108:DG185DG186_JJ-1.312.1033.364-11.745-3.22633.3713.9580.3093.407-5.419.65835.465
1108II_DC108DA109:DT184DG185_JJ0.2572.3883.7275.812-16.51447.5144.0170.1272.814-19.731-6.94450.461
1114II_DC114DA115:DT178DG179_JJ0.8480.7833.0591.2679.87637.124-0.007-1.1363.18315.18-1.94738.391
1116II_DC116DT117:DA176DG177_JJ0.344-0.0633.735-0.9836.13136.463-1.04-0.6933.6669.7121.55736.971
1129II_DC129DT130:DA163DG164_JJ-1.5771.8563.287.19-9.43342.1833.3082.742.539-12.806-9.76143.745
1132II_DC132DA133:DT160DG161_JJ0.7381.0983.439-3.04610.89533.6670.052-1.7023.53618.1845.08435.464
115II_DG15DC16:DG277DC278_JJ-0.4830.7992.7831.0773.25931.070.9521.0722.8326.06-2.00331.254
118II_DG18DA19:DT274DC275_JJ-0.09-0.5553.581-2.3911.33239.756-0.983-0.173.5611.9563.51239.846
131II_DG31DT32:DA261DC262_JJ0.028-0.7523.4792.3188.02926.485-3.5660.5183.11216.994-4.90627.75
133II_DG33DT34:DA259DC260_JJ-0.059-1.173.3280.3615.23230.66-3.1720.1783.0899.804-0.67731.094
139II_DG39DG40:DC253DC254_JJ-0.2660.7142.506-13.56712.08527.176-0.481-1.4952.46622.77325.56732.594
140II_DG40DA41:DT252DC253_JJ-0.6390.0623.107-1.8895.17734.054-0.6650.7973.1128.7683.234.484
146II_DG46DC47:DG246DC247_JJ-0.693-0.4213.45-0.696-1.26934.878-0.4991.0433.475-2.1161.1634.907
158II_DG58DG59:DC234DC235_JJ0.8110.9864.03510.791-3.55540.7261.8270.2664.017-4.992-15.15342.217
159II_DG59DC60:DG233DC234_JJ-0.8180.0873.415-8.8-0.27936.4510.1750.0333.511-0.43913.82237.464
163II_DG63DT64:DA229DC230_JJ-0.242-0.7653.415-6.0727.14230.911-2.68-0.6713.15413.02911.07632.268
168II_DG68DC69:DG224DC225_JJ-0.6580.533.6245.914-3.53338.3911.2591.7633.429-5.32-8.90638.982
171II_DG71DA72:DT221DC222_JJ-0.6280.5183.3313.3859.26435.899-0.4591.453.28914.691-5.36837.186
178II_DG78DC79:DG214DC215_JJ-1.2681.4023.726-1.181-8.38938.9363.131.7113.399-12.4071.74739.812
181II_DG81DA82:DT211DC212_JJ-0.7480.1552.882-1.8482.58432.337-0.1251.0492.9224.6263.30932.489
187II_DG87DC88:DG205DC206_JJ-1.8720.4013.547-3.424-20.99441.0032.4842.0753.139-27.8324.53945.98
194II_DG94DA95:DT198DC199_JJ0.2-0.0223.033-6.7178.20930.057-1.421-1.4952.82115.24412.47431.833
197II_DG97DG98:DC195DC196_JJ0.9630.5113.29-1.7456.28833.32-0.146-1.9333.27610.8373.00833.935
198II_DG98DA99:DT194DC195_JJ-2.040.6943.68-6.409-12.06745.2631.9961.9493.633-15.2728.11247.176
1100II_DG100DC101:DG192DC193_JJ-1.2920.0923.6845.4092.55137.867-0.2112.7143.4723.901-8.27238.319
1103II_DG103DT104:DA189DC190_JJ-0.235-0.9023.1840.0956.65427.592-3.2860.5012.8913.7-0.19628.368
1121II_DG121DG122:DC171DC172_JJ-0.1330.482.999-3.8852.28439.6840.461-0.2173.023.3515.70139.929
1122II_DG122DT123:DA170DC171_JJ-0.312-0.8453.33612.4-2.69130.409-1.0252.7033.044-4.872-22.45132.892
1125II_DG125DA126:DT167DC168_JJ-0.601-0.5373.86-2.87-8.93441.3870.3540.4793.92-12.4493.99942.392
1131II_DG131DC132:DG161DC162_JJ-1.2331.6662.662-18.675-11.58439.5513.0480.2042.431-15.73425.36645.032
1134II_DG134DG135:DC158DC159_JJ-0.144-0.3643.715-2.13117.29329.453-3.681-0.1323.04730.8473.80134.123
1135II_DG135DT136:DA157DC158_JJ0.5940.1322.934-2.707-1.25231.090.457-1.5592.866-2.3285.03631.229
1137II_DG137DG138:DC155DC156_JJ-0.254-0.3553.489-3.4017.77333.39-1.883-0.1323.33413.2635.80434.422
1138II_DG138DA139:DT154DC155_JJ-0.7380.1212.722-6.131-0.96236.6920.2980.4642.801-1.5159.65437.195
1144II_DG144DA145:DT148DC149_JJ0.03-0.583.626-0.07515.43735.991-2.874-0.0553.12923.6880.11539.061
12II_DT2DC3:DG290DA291_JJ1.1750.3733.1089.1232.32233.3530.269-0.5663.3223.949-15.51534.62
16II_DT6DA7:DT286DA287_JJ-0.142-0.1183.534-1.103-5.95434.1420.7950.0543.507-10.0431.86134.659
18II_DT8DC9:DG284DA285_JJ0.872-0.4973.6435.6163.68640.334-1.167-0.5563.6695.301-8.07740.867
114II_DT14DG15:DC278DA279_JJ0.1872.3043.276-2.838-9.25445.3043.667-0.4632.764-11.8543.63546.273
120II_DT20DT21:DA272DA273_JJ-0.045-0.2053.3973.906-0.30338.244-0.2710.5733.378-0.461-5.94338.437
121II_DT21DC22:DG271DA272_JJ0.2020.2983.626-5.9332.06642.7860.18-0.9183.5782.8148.0843.224
123II_DT23DA24:DT269DA270_JJ0.3560.2583.2373.6798.49338.006-0.641-0.0873.23712.81-5.54939.076
132II_DT32DG33:DC260DA261_JJ0.3710.2843.343.1899.94334.911-0.984-0.1333.31516.132-5.17436.392
134II_DT34DA35:DT258DA259_JJ-0.2160.1593.702-0.780.88641.4940.1180.2113.7081.251.141.51
136II_DT36DT37:DA256DA257_JJ-0.578-0.8213.574-3.191-1.4930.088-1.2370.3933.65-2.8586.1230.289
137II_DT37DT38:DA255DA256_JJ-0.60.6833.4756.093-7.37345.4361.5141.2973.231-9.422-7.78746.38
138II_DT38DG39:DC254DA255_JJ0.9532.8133.1463.059-10.5143.2284.56-1.012.489-14.0-4.07544.528
145II_DT45DG46:DC247DA248_JJ1.2392.1522.8967.894-7.61544.2123.364-1.02.681-9.937-10.30145.486
148II_DT48DC49:DG244DA245_JJ-0.7320.2463.187-0.103-0.54138.9280.4331.0873.185-0.8120.15438.932
152II_DT52DC53:DG240DA241_JJ0.6230.2873.236.2528.30929.763-1.0550.0433.25215.59-11.72931.488
162II_DT62DG63:DC230DA231_JJ0.6270.9953.6066.0545.17635.3420.771-0.0383.7638.394-9.81836.201
164II_DT64DT65:DA228DA229_JJ0.271-0.0593.0016.4387.40532.872-1.1780.4772.91912.736-11.07334.267
165II_DT65DC66:DG227DA228_JJ0.9780.2873.1365.8058.03932.68-0.781-0.753.23513.893-10.03334.112
170II_DT70DG71:DC222DA223_JJ1.0110.4693.092-4.8717.28830.611-0.396-2.6822.93213.4628.99731.812
174II_DT74DT75:DA218DA219_JJ0.206-0.3333.168-0.9788.47431.698-1.983-0.5252.97515.1731.75132.798
175II_DT75DC76:DG217DA218_JJ-0.1680.3233.516-7.2812.28932.829-1.431-0.8863.38120.57312.18735.723
180II_DT80DG81:DC212DA213_JJ-0.1220.7163.494-4.80411.98135.433-0.616-0.5043.53118.9277.58937.641
186II_DT86DG87:DC206DA207_JJ1.0470.5633.494-1.367.37532.253-0.357-2.0863.48813.0562.40733.091
190II_DT90DT91:DA202DA203_JJ0.7190.1772.6987.3561.19937.1840.142-0.3082.7891.857-11.39637.898
191II_DT91DT92:DA201DA202_JJ0.4480.4893.3470.1617.26330.271-0.536-0.8043.37213.661-0.30231.111
192II_DT92DT93:DA200DA201_JJ0.2380.1843.5165.7620.15427.624-3.1530.592.97136.316-10.37934.553
193II_DT93DG94:DC199DA200_JJ0.19-0.0994.0291.39622.43925.034-4.735-0.0462.9742.439-2.64133.527
196II_DT96DG97:DC196DA197_JJ0.1610.6433.330.8515.22336.1750.282-0.1363.398.356-1.36136.547
1104II_DT104DT105:DA188DA189_JJ0.141-0.4023.1524.6992.75134.153-1.0850.4613.1024.648-7.93834.572
1105II_DT105DT106:DA187DA188_JJ0.058-0.1773.5513.812.43633.633-2.20.4913.27220.562-6.28435.991
1106II_DT106DC107:DG186DA187_JJ1.6131.353.15110.029.41636.5170.792-1.1063.67914.414-15.33838.937
1112II_DT112DA113:DT180DA181_JJ0.291-0.2693.9952.88123.08533.798-3.472-0.0313.20135.033-4.37240.837
1117II_DT117DT118:DA175DA176_JJ0.192-0.4773.4971.328-0.94739.071-0.591-0.1163.512-1.415-1.98539.104
1118II_DT118DT119:DA174DA175_JJ0.2140.492.9474.84-8.97938.9651.6190.1772.778-13.188-7.10940.228
1119II_DT119DT120:DA173DA174_JJ0.5681.5033.1223.839-15.67743.4593.105-0.4322.505-20.354-4.98446.223
1120II_DT120DG121:DC172DA173_JJ0.1381.0993.342-2.3670.97937.9781.557-0.5193.3541.5023.63238.061
1123II_DT123DA124:DT169DA170_JJ0.3580.5733.654-1.1917.22331.081-2.01-0.7913.47629.4672.03635.451
1128II_DT128DC129:DG164DA165_JJ0.107-0.5313.595-12.9853.8133.516-1.445-2.1753.2566.29721.46236.072
1130II_DT130DG131:DC162DA163_JJ0.4371.553.5525.76915.7434.8530.0080.1953.89924.597-9.01538.562
1136II_DT136DG137:DC156DA157_JJ0.5440.7883.3696.41212.47534.173-0.5980.0873.48220.206-10.38636.86
1140II_DT140DA141:DT152DA153_JJ-0.5470.0963.048-1.130.33835.2260.1110.7473.0640.5581.86735.245
1142II_DT142DT143:DA150DA151_JJ0.4320.232.8312.0090.25229.0110.41-0.4782.8560.502-4.00529.08
1143II_DT143DG144:DC149DA150_JJ-0.4490.153.463-2.12213.53436.821-1.5150.3963.33320.5723.22539.204

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.